Rorug02G0584000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001391
Physical Location & Seq
Reverse (-)
70696762 .. 70698011
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0584000.1

Sequence Viewer

Length: 744 bp
ATGGTTGAGGCAATTGCTGTCTGCAGAATTCTTGATAGAGGTATGCCTTCTCGCCCAGAAAAGCTGAAGGTGAAGCTGAAAAAGAAGCAGCAGGACAGGCATTGCCATTATGCAAAGGCGCTATTCAACAGTTTCAACTTGCCGAAAAAGGATGACCAGATGAAACCTTTAACCTTGCACCACAGAATCACTACTGTTGCCCTACTCTGTGAGTCCTCCAAGGCTTCATTTGATCAATATTTGGATGATGAACAAAGGGTTATTAAAGCCCTATTTCCAGGCATAGAGGCAAGAAAACTTAACAAGAAAGAGTGGAGGATTCAAATGCCAACCATGCAATTCTTGTTCATGTCTGTCTGCCTTGTATTATACATCAATTTAAGATACAAGTCCAAAGGGAAAGACTACCCTCCTCATGTTCCTCATCACATCCCCATGGTCCTTGAGCTTGAAGCTACAAGGTGGGAACTTGAGGGCTTCCCCTATGAGTACCGGCCACGTGACTTTAGCATATCTGCTAAAGGAACCGTATATCCTGATAGAAAGCAAGGAACACAAAGCAGGCTTCGAACCCAGATTGACGTAATCTTAAGCTTCATTGTTTCACCTCTGCTTGGTTGGGTTCCACAAAGTGTTATGCATAGCCTCATAAAATCGCTGGTGAAGACTATGATGGCGGATTCGACATCAAATGCCAGATTGCTTGAAGACTATGAAGTATTCAAAACGAAGAATGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.79

Weight (kDa)

9.62

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 77 - 239 2.3e-25 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 677
AcoI YGGCCR 1 cut(s) 494
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 86
AcvI CACGTG 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 614
AflII CTTAAG 1 cut(s) 589
AgsI TTSAA 6 cut(s) 127, 136, 323, 452, 707, 724
AjnI CCWGG 1 cut(s) 277
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
AluBI AGCT 5 cut(s) 64, 76, 448, 455, 594
AluI AGCT 5 cut(s) 64, 76, 448, 455, 594
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 82, 597, 673
AsuII TTCGAA 1 cut(s) 568
AvaII GGWCC 1 cut(s) 439
BbrPI CACGTG 1 cut(s) 500
BbsI GAAGAC 2 cut(s) 671, 714
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 667
BciT130I CCWGG 1 cut(s) 279
BclI TGATCA 1 cut(s) 232
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 589
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 2 cut(s) 526, 624
BmrFI CCNGG 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 671, 714
Bpu14I TTCGAA 1 cut(s) 568
BpuEI CTTGAG 2 cut(s) 464, 491
BsaAI YACGTR 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 219, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse118I RCCGGY 1 cut(s) 492
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 219, 435
BseGI GGATG 3 cut(s) 157, 250, 429
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 614
BsnI GGCC 1 cut(s) 496
Bsp119I TTCGAA 1 cut(s) 568
Bsp143I GATC 1 cut(s) 232
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 1 cut(s) 677
BspANI GGCC 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 526, 624
BspMAI CTGCAG 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 568
BspTI CTTAAG 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 492
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 219, 435
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 219, 435
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 3 cut(s) 131, 196, 529
BstAFI CTTAAG 1 cut(s) 589
BstBAI YACGTR 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 563
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 3 cut(s) 157, 250, 429
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 97, 334
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 671, 714
BsuRI GGCC 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 3 cut(s) 157, 250, 429
Cac8I GCNNGC 1 cut(s) 563
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 490
CviAII CATG 4 cut(s) 334, 349, 416, 436
CviQI GTAC 1 cut(s) 490
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
DraIII CACNNNGTG 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 494
EciI GGCGGA 1 cut(s) 692
Eco130I CCWWGG 2 cut(s) 219, 435
Eco47I GGWCC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 500
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 219, 435
EcoT22I ATGCAT 1 cut(s) 642
ErhI CCWWGG 2 cut(s) 219, 435
FaeI CATG 4 cut(s) 337, 352, 419, 439
FatI CATG 4 cut(s) 333, 348, 415, 435
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 164, 257, 416
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 1 cut(s) 496
HapII CCGG 1 cut(s) 493
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 337, 352, 419, 439
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 592
HinfI GANTC 4 cut(s) 186, 212, 319, 680
HpaII CCGG 1 cut(s) 493
HphI GGTGA 3 cut(s) 82, 597, 673
Hpy188III TCNNGA 2 cut(s) 32, 536
HpyAV CCTTC 2 cut(s) 57, 61
HpyCH4III ACNGT 3 cut(s) 131, 196, 529
HpyCH4IV ACGT 2 cut(s) 499, 582
HpyCH4V TGCA 5 cut(s) 24, 113, 178, 337, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 334
HpySE526I ACGT 2 cut(s) 499, 582
Hsp92II CATG 4 cut(s) 337, 352, 419, 439
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 100
MaeII ACGT 2 cut(s) 499, 582
MaeIII GTNAC 1 cut(s) 500
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 3 cut(s) 676, 719, 742
MfeI CAATTG 1 cut(s) 12
MluCI AATT 4 cut(s) 12, 27, 338, 376
MlyI GAGTC 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 642
MseI TTAA 5 cut(s) 170, 264, 300, 380, 590
MslI CAYNNNNRTG 1 cut(s) 434
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 97, 334
NcoI CCATGG 1 cut(s) 435
NdeII GATC 1 cut(s) 232
NlaIII CATG 4 cut(s) 337, 352, 419, 439
NlaIV GGNNCC 2 cut(s) 526, 624
NmuCI GTSAC 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 642
NspV TTCGAA 1 cut(s) 568
PfeI GAWTC 3 cut(s) 186, 319, 680
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 220
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 277
PspCI CACGTG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 526, 624
PspPI GGNCC 1 cut(s) 439
PstI CTGCAG 1 cut(s) 26
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 5 cut(s) 170, 264, 300, 380, 590
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 568
SinI GGWCC 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 3 cut(s) 443, 470, 589
SmoI CTYRAG 3 cut(s) 443, 470, 589
Sse9I AATT 4 cut(s) 12, 27, 338, 376
SsiI CCGC 1 cut(s) 677
SspI AATATT 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 2 cut(s) 219, 435
TaaI ACNGT 3 cut(s) 131, 196, 529
TaiI ACGT 2 cut(s) 502, 585
TaqI TCGA 2 cut(s) 568, 683
TasI AATT 4 cut(s) 12, 27, 338, 376
TfiI GAWTC 3 cut(s) 186, 319, 680
Tru1I TTAA 5 cut(s) 170, 264, 300, 380, 590
Tru9I TTAA 5 cut(s) 170, 264, 300, 380, 590
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 6 cut(s) 176, 216, 264, 337, 586, 729
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.