Rh5DG300400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001391
Physical Location & Seq
Reverse (-)
37722038 .. 37724244
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG300400.1

Sequence Viewer

Length: 504 bp
ATGCATGTGGTACAATATGCACCGGAAGAAGCTTGGATGGATTGGGAACCTGTTTTAAATAATATGCATTTGGGTGCACGAGCAAGTTACTTTGCGCTCATTGTGAGCTGTCTACTGAAAGTTGACACGCAATCTGGTGGATGGGAAAAGTGCCTGACCAAGATGCTGAAAAAAATCAGAGGAGCAAAGTATTCTTTAAACGTCCAAGAAGGAACGCTCCATGTTTCTGGGAAAGTAAACCCGACGAAAGTACTGAACAGGATAAAGAAGGCTGGGAAAGTAGCAGAGATCTTGTGGGTGAATAGTGGAGTAACTGACAGTGTCTATTTTGAAGATCCAACCTCGTATAGTAATCACTATAGTCCTTATAATAATGATTACAATTATGTGAACAATGGTCATGCAGCTGGATACCATCTTTCTTCTTCATACAGCCATCATCATCAGCTTCCTATCACCCATCATTATCCCTATGGCGGCCAAGGTTATGGTGGATTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.86

Weight (kDa)

8.42

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AccI GTMKAC 1 cut(s) 112
AciI CCGC 1 cut(s) 477
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 478
AfaI GTAC 2 cut(s) 12, 252
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 1 cut(s) 332
AluBI AGCT 4 cut(s) 32, 108, 407, 448
AluI AGCT 4 cut(s) 32, 108, 407, 448
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 1 cut(s) 329
AoxI GGCC 1 cut(s) 478
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 404
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 310, 448
BaeGI GKGCMC 1 cut(s) 79
BauI CACGAG 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 416
BccI CCATC 5 cut(s) 31, 135, 423, 444, 468
BciVI GTATCC 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 358
BfuI GTATCC 1 cut(s) 404
BglII AGATCT 1 cut(s) 288
BisI GCNGC 2 cut(s) 405, 478
BlsI GCNGC 2 cut(s) 406, 479
BmcAI AGTACT 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 2 cut(s) 42, 146
BseLI CCNNNNNNNGG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 416
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 476
BsnI GGCC 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 288, 334
BspACI CCGC 1 cut(s) 477
BspANI GGCC 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 288, 334
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 320
BstF5I GGATG 2 cut(s) 42, 146
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 291, 337
BstMBI GATC 2 cut(s) 288, 334
BstNSI RCATGY 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 288, 334
BstXI CCANNNNNNTGG 2 cut(s) 227, 488
BstYI RGATCY 2 cut(s) 288, 334
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 480
BtsCI GGATG 2 cut(s) 42, 146
BtsIMutI CAGTG 1 cut(s) 325
CfoI GCGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 11, 251
CviAII CATG 3 cut(s) 5, 221, 401
CviJI RGCY 7 cut(s) 32, 108, 272, 407, 435, 448, 480
CviKI_1 RGCY 7 cut(s) 32, 108, 272, 407, 435, 448, 480
CviQI GTAC 2 cut(s) 11, 251
DpnI GATC 2 cut(s) 290, 336
DpnII GATC 2 cut(s) 288, 334
DraI TTTAAA 2 cut(s) 57, 198
EaeI YGGCCR 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 481
EcoT22I ATGCAT 2 cut(s) 6, 69
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 8, 224, 404
FatI CATG 3 cut(s) 4, 220, 400
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 405, 478
FokI GGATG 2 cut(s) 49, 153
Fsp4HI GCNGC 2 cut(s) 405, 478
GlaI GCGC 1 cut(s) 96
GluI GCNGC 2 cut(s) 405, 478
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 480
HapII CCGG 1 cut(s) 23
HhaI GCGC 1 cut(s) 97
Hin1II CATG 3 cut(s) 8, 224, 404
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 30
HpaII CCGG 1 cut(s) 23
HphI GGTGA 2 cut(s) 310, 448
Hpy166II GTNNAC 5 cut(s) 77, 113, 124, 238, 391
Hpy188I TCNGA 1 cut(s) 179
Hpy8I GTNNAC 5 cut(s) 77, 113, 124, 238, 391
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 203, 262
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 4, 20, 67, 77, 404
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 8, 224, 404
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 2 cut(s) 288, 334
LmnI GCTCC 2 cut(s) 182, 222
LpnPI CCDG 8 cut(s) 36, 63, 120, 167, 213, 244, 258, 393
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 1 cut(s) 153
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 86, 310
MalI GATC 2 cut(s) 290, 336
MboI GATC 2 cut(s) 288, 334
MboII GAAGA 4 cut(s) 38, 344, 414, 417
MflI RGATCY 2 cut(s) 288, 334
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 2 cut(s) 173, 352
Mph1103I ATGCAT 2 cut(s) 6, 69
MseI TTAA 2 cut(s) 56, 197
MslI CAYNNNNRTG 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 23
NdeII GATC 2 cut(s) 288, 334
NlaIII CATG 3 cut(s) 8, 224, 404
NlaIV GGNNCC 1 cut(s) 48
NsiI ATGCAT 2 cut(s) 6, 69
NspI RCATGY 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 2 cut(s) 406, 479
PsiI TTATAA 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 48
PsuI RGATCY 2 cut(s) 288, 334
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 2 cut(s) 12, 252
RsaNI GTAC 2 cut(s) 11, 251
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 56, 197
SatI GCNGC 2 cut(s) 405, 478
Sau3AI GATC 2 cut(s) 288, 334
ScaI AGTACT 1 cut(s) 252
SduI GDGCHC 1 cut(s) 79
SetI ASST 8 cut(s) 34, 52, 110, 204, 344, 409, 450, 487
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 1 cut(s) 382
SsiI CCGC 1 cut(s) 477
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 204
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 480
Tru1I TTAA 2 cut(s) 56, 197
Tru9I TTAA 2 cut(s) 56, 197
TscAI CASTG 1 cut(s) 325
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 1 cut(s) 320
VneI GTGCAC 1 cut(s) 75
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 252
Zsp2I ATGCAT 2 cut(s) 6, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.