RchiOBHm_Chr2g0175421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001391
Physical Location & Seq
Reverse (-)
87630035 .. 87632148
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54249

Sequence Viewer

Length: 432 bp
ATGCATACTATAGGACGAATTTATGTTTGTTCCGACGATATATGCTTCAGAAGTTACTGCCTAATTAAACAACGAGTGAAATACTACATTGATGCAGAAGCTGGAATCGCATATGTTGCTGGTACGATCCACCCAGACACCCTTCTGAGAGTGTTAGCAAAGTCTGGAAGGCATGCTCGGCTGCTTTGGGTTGATTCAGGATATCGTCAACAAGTCTTGAAGGAGAAAAGTACTAGTACTAGCTATGGTTATGGCCCCAACGTTCAGGGGAAAACTAGTAGTAGCTCTCATGGTTATGGTCCTAACTGTAACAATTATGGGGGGGATTCTTATGGTCAACTTCTCAGTAGGAGCTACGAACAACTAGACAATCAGTCGACTATGGTGAGTCACCGATTTTATGATGCAGACACCCAGTGCACCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.07

Weight (kDa)

8.57

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 377
AclI AACGTT 1 cut(s) 261
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 417
AfaI GTAC 3 cut(s) 124, 232, 238
AgsI TTSAA 1 cut(s) 220
AhdI GACNNNNNGTC 1 cut(s) 373
AhlI ACTAGT 2 cut(s) 233, 275
AluBI AGCT 4 cut(s) 101, 243, 285, 354
AluI AGCT 4 cut(s) 101, 243, 285, 354
Alw21I GWGCWC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 418
AlwI GGATC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 253
ApaLI GTGCAC 1 cut(s) 418
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 254, 299
AsuHPI GGTGA 2 cut(s) 383, 397
AvaII GGWCC 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 168
BcuI ACTAGT 2 cut(s) 233, 275
BfaI CTAG 4 cut(s) 234, 240, 276, 365
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmcAI AGTACT 2 cut(s) 232, 238
Bme18I GGWCC 1 cut(s) 299
BmeRI GACNNNNNGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 254, 299
BmiI GGNNCC 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 2 cut(s) 82, 394
BmuI ACTGGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 137, 358
BseNI ACTGG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 422
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 138, 357
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 415
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 146, 344
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 3 cut(s) 107, 116, 178
BstNSI RCATGY 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 422
BstV1I GCAGC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 254, 299
Csp6I GTAC 3 cut(s) 123, 231, 237
CviAII CATG 2 cut(s) 173, 290
CviJI RGCY 6 cut(s) 101, 181, 243, 255, 285, 354
CviKI_1 RGCY 6 cut(s) 101, 181, 243, 255, 285, 354
CviQI GTAC 3 cut(s) 123, 231, 237
DdeI CTNAG 2 cut(s) 146, 344
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DraIII CACNNNGTG 1 cut(s) 417
DriI GACNNNNNGTC 1 cut(s) 373
Eam1105I GACNNNNNGTC 1 cut(s) 373
Eco32I GATATC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 31
EcoRV GATATC 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 176, 293
FatI CATG 2 cut(s) 172, 289
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 4 cut(s) 234, 240, 276, 365
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 2 cut(s) 176, 293
HincII GTYRAC 3 cut(s) 209, 338, 378
HindII GTYRAC 3 cut(s) 209, 338, 378
HinfI GANTC 4 cut(s) 105, 194, 326, 388
HphI GGTGA 2 cut(s) 383, 397
Hpy166II GTNNAC 4 cut(s) 209, 338, 378, 420
Hpy188I TCNGA 3 cut(s) 34, 50, 147
Hpy188III TCNNGA 3 cut(s) 165, 198, 217
Hpy8I GTNNAC 4 cut(s) 209, 338, 378, 420
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 152, 162, 214
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 4 cut(s) 4, 95, 407, 420
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 116, 178
HpyF3I CTNAG 2 cut(s) 146, 344
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 2 cut(s) 176, 293
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 7 cut(s) 87, 105, 147, 150, 183, 251, 428
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 2 cut(s) 82, 394
MaeI CTAG 4 cut(s) 234, 240, 276, 365
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 3 cut(s) 53, 308, 389
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 3 cut(s) 18, 63, 313
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 294, 425
MwoI GCNNNNNNNGC 3 cut(s) 107, 116, 178
NdeI CATATG 1 cut(s) 112
NdeII GATC 1 cut(s) 126
NlaIII CATG 2 cut(s) 176, 293
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PfeI GAWTC 3 cut(s) 105, 194, 326
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
Psp1406I AACGTT 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 254, 299
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 3 cut(s) 124, 232, 238
RsaNI GTAC 3 cut(s) 123, 231, 237
RseI CAYNNNNRTG 2 cut(s) 294, 425
SalI GTCGAC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 254, 299
ScaI AGTACT 2 cut(s) 232, 238
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 1 cut(s) 422
SetI ASST 5 cut(s) 103, 245, 264, 287, 356
SfaNI GCATC 2 cut(s) 82, 394
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 2 cut(s) 294, 425
SpeI ACTAGT 2 cut(s) 233, 275
SphI GCATGC 1 cut(s) 176
Sse9I AATT 3 cut(s) 18, 63, 313
SspMI CTAG 4 cut(s) 234, 240, 276, 365
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 377
TasI AATT 3 cut(s) 18, 63, 313
TatI WGTACW 2 cut(s) 230, 236
TfiI GAWTC 3 cut(s) 105, 194, 326
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 389
TspRI CASTG 1 cut(s) 422
VneI GTGCAC 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 18
XceI RCATGY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 4 cut(s) 234, 240, 276, 365
ZrmI AGTACT 2 cut(s) 232, 238
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.