RchiOBHm_Chr2g0175431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001391
Physical Location & Seq
Reverse (-)
87633238 .. 87634780
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54250

Sequence Viewer

Length: 765 bp
ATGGCGGCCAAGGATGATACAAAGGCAAAGATCCCCAGTAATGAAGTGACTTGTCAATTAAAGCTGGATAATAGCGCCAAGGGATGGCACAAGACCATTTCCAAAGTTTTGAAAACTATCGAGGGAGTATCTTACAGCATTGATATGGAAAATGGAAGCGTAACTGTTACGGGTTGGATTGACCCAGAAACCCTTATGGCTCGATTAGCGAAATCTGGGAAGAAAATAGAGCTGGTTAGGGTTGATACAGGAGTTCTTCGTGAGGCGCGGATAAAAAAACTGAAGCAGCAACAGCAGTTACAACAACAATATTATTATGGACATGGATACCCTTTTGGTTATGTTAATGGTTATTATCCTCAGCAATATGGATACTATAATCAGAGTGGAGCTGGATACCCTTATGGAACAACACCAGATTACTATCGCAATCATCATCAGCTCTACCCTAATTATTATCAGCAGCAGCCAGTTAGGCCCACTGCGCCACATGCGCCACCTGCACCACGATTAGGTTTTCCACAGCCACCACCGCCGTTGGAGATTCACCCGTTTTACGATCCAGAGACACAATGCACGATTATTCTTGCTGCTTCTGCGGCGGTGAAGGTGACAAGCTCGTCGTCAACAGCGTCGACGATCAGAGCCTACTCTATGCCTCTGATTCGCAGTGAAAGCCCCAAACCCATCGGAAACCGGCAACTCCGATTCTCAATCAGACTCGGAATCTTGATCAATTTCAGTTTCTTCAAAACAGCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.6

Weight (kDa)

9.53

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 31 - 75 9.8e-06 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 508
AasI GACNNNNNNGTC 1 cut(s) 619
Acc36I ACCTGC 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 84
AccI GTMKAC 1 cut(s) 635
AccII CGCG 1 cut(s) 268
AciI CCGC 5 cut(s) 5, 268, 533, 599, 602
AclWI GGATC 2 cut(s) 25, 554
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 84, 512
AgsI TTSAA 2 cut(s) 112, 751
AluBI AGCT 5 cut(s) 64, 232, 392, 442, 618
AluI AGCT 5 cut(s) 64, 232, 392, 442, 618
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 2 cut(s) 25, 554
AoxI GGCC 2 cut(s) 6, 476
ApeKI GCWGC 4 cut(s) 286, 463, 466, 590
AspLEI GCGC 4 cut(s) 77, 268, 487, 496
AspS9I GGNCC 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 539, 616, 622
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 4 cut(s) 298, 475, 478, 577
BccI CCATC 2 cut(s) 78, 695
BceAI ACGGC 1 cut(s) 520
BciVI GTATCC 3 cut(s) 320, 365, 389
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 1 cut(s) 560
BfoI RGCGCY 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 508
BfuI GTATCC 3 cut(s) 320, 365, 389
BglI GCCNNNNNGGC 1 cut(s) 475
BisI GCNGC 6 cut(s) 6, 287, 464, 467, 591, 600
BlsI GCNGC 6 cut(s) 7, 288, 465, 468, 592, 601
BmgT120I GGNCC 1 cut(s) 477
BmrI ACTGGG 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 9, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 512
Bse118I RCCGGY 1 cut(s) 696
Bse1I ACTGG 2 cut(s) 36, 470
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 9, 78
BseGI GGATG 2 cut(s) 19, 89
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 84, 512
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 36, 470
BseXI GCAGC 4 cut(s) 298, 475, 478, 577
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 8, 478
BsiSI CCGG 1 cut(s) 697
BslI CCNNNNNNNGG 2 cut(s) 84, 512
BsmAI GTCTC 1 cut(s) 560
BsnI GGCC 2 cut(s) 8, 478
Bsp143I GATC 4 cut(s) 30, 559, 639, 732
BspACI CCGC 5 cut(s) 5, 268, 533, 599, 602
BspANI GGCC 2 cut(s) 8, 478
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 2 cut(s) 25, 554
BsrFI RCCGGY 1 cut(s) 696
BsrI ACTGG 2 cut(s) 36, 470
BssAI RCCGGY 1 cut(s) 696
BssECI CCNNGG 2 cut(s) 9, 78
BssMI GATC 4 cut(s) 30, 559, 639, 732
BssT1I CCWWGG 2 cut(s) 9, 78
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 19, 89
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 4 cut(s) 77, 268, 487, 496
BstKTI GATC 4 cut(s) 33, 562, 642, 735
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 4 cut(s) 30, 559, 639, 732
BstNSI RCATGY 1 cut(s) 494
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 4 cut(s) 298, 475, 478, 577
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuI GTATCC 3 cut(s) 320, 365, 389
BsuRI GGCC 2 cut(s) 8, 478
BtsCI GGATG 2 cut(s) 19, 89
BtsI GCAGTG 2 cut(s) 480, 676
BtsIMutI CAGTG 2 cut(s) 480, 676
BveI ACCTGC 1 cut(s) 508
CfoI GCGC 4 cut(s) 77, 268, 487, 496
Cfr10I RCCGGY 1 cut(s) 696
Cfr13I GGNCC 1 cut(s) 477
CseI GACGC 1 cut(s) 621
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 2 cut(s) 323, 491
DdeI CTNAG 1 cut(s) 360
DpnI GATC 4 cut(s) 32, 561, 641, 734
DpnII GATC 4 cut(s) 30, 559, 639, 732
DrdI GACNNNNNNGTC 1 cut(s) 619
DseDI GACNNNNNNGTC 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 9, 78
Eco57I CTGAAG 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 9, 78
ErhI CCWWGG 2 cut(s) 9, 78
FaeI CATG 2 cut(s) 326, 494
FatI CATG 2 cut(s) 322, 490
FbaI TGATCA 1 cut(s) 732
FblI GTMKAC 1 cut(s) 635
Fnu4HI GCNGC 6 cut(s) 6, 287, 464, 467, 591, 600
FokI GGATG 2 cut(s) 26, 96
Fsp4HI GCNGC 6 cut(s) 6, 287, 464, 467, 591, 600
GlaI GCGC 4 cut(s) 76, 267, 486, 495
GluI GCNGC 6 cut(s) 6, 287, 464, 467, 591, 600
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 2 cut(s) 8, 478
HapII CCGG 1 cut(s) 697
HgaI GACGC 1 cut(s) 621
HhaI GCGC 4 cut(s) 77, 268, 487, 496
Hin1II CATG 2 cut(s) 326, 494
Hin6I GCGC 4 cut(s) 75, 266, 485, 494
HinP1I GCGC 4 cut(s) 75, 266, 485, 494
HincII GTYRAC 2 cut(s) 627, 636
HindII GTYRAC 2 cut(s) 627, 636
HinfI GANTC 5 cut(s) 544, 664, 708, 720, 726
HpaII CCGG 1 cut(s) 697
HphI GGTGA 3 cut(s) 539, 616, 622
Hpy166II GTNNAC 2 cut(s) 627, 636
Hpy188I TCNGA 7 cut(s) 384, 644, 663, 692, 707, 719, 725
Hpy188III TCNNGA 3 cut(s) 260, 563, 730
Hpy8I GTNNAC 2 cut(s) 627, 636
Hpy99I CGWCG 3 cut(s) 625, 637, 640
HpyAV CCTTC 1 cut(s) 601
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 503, 576
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 2 cut(s) 326, 494
HspAI GCGC 4 cut(s) 75, 266, 485, 494
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 4 cut(s) 30, 559, 639, 732
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 4 cut(s) 298, 475, 478, 577
MaeIII GTNAC 5 cut(s) 46, 160, 166, 297, 610
MalI GATC 4 cut(s) 32, 561, 641, 734
MboI GATC 4 cut(s) 30, 559, 639, 732
MboII GAAGA 3 cut(s) 232, 248, 739
MflI RGATCY 1 cut(s) 30
MluCI AATT 3 cut(s) 56, 451, 736
MlyI GAGTC 1 cut(s) 714
MmeI TCCRAC 2 cut(s) 155, 519
MnlI CCTC 4 cut(s) 115, 256, 369, 669
MseI TTAA 2 cut(s) 59, 345
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 697
MvnI CGCG 1 cut(s) 268
NdeII GATC 4 cut(s) 30, 559, 639, 732
NlaIII CATG 2 cut(s) 326, 494
NmuCI GTSAC 2 cut(s) 46, 610
NspI RCATGY 1 cut(s) 494
PaqCI CACCTGC 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 629
PfeI GAWTC 4 cut(s) 544, 664, 708, 726
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 6 cut(s) 7, 288, 465, 468, 592, 601
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
PspPI GGNCC 1 cut(s) 477
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 143
SalI GTCGAC 1 cut(s) 634
SaqAI TTAA 2 cut(s) 59, 345
SatI GCNGC 6 cut(s) 6, 287, 464, 467, 591, 600
Sau3AI GATC 4 cut(s) 30, 559, 639, 732
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 1 cut(s) 714
SetI ASST 8 cut(s) 66, 234, 394, 444, 502, 517, 612, 620
SgrDI CGTCGACG 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 3 cut(s) 56, 451, 736
SsiI CCGC 5 cut(s) 5, 268, 533, 599, 602
SspI AATATT 1 cut(s) 311
StyI CCWWGG 2 cut(s) 9, 78
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 120, 202, 635
TasI AATT 3 cut(s) 56, 451, 736
TauI GCSGC 2 cut(s) 8, 602
TfiI GAWTC 4 cut(s) 544, 664, 708, 726
Tru1I TTAA 2 cut(s) 59, 345
Tru9I TTAA 2 cut(s) 59, 345
TscAI CASTG 2 cut(s) 487, 676
TseFI GTSAC 2 cut(s) 46, 610
TseI GCWGC 4 cut(s) 286, 463, 466, 590
Tsp45I GTSAC 2 cut(s) 46, 610
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 2 cut(s) 487, 676
Van91I CCANNNNNTGG 1 cut(s) 84
XceI RCATGY 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.