Prupe.3G304900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001391
Physical Location & Seq
Reverse (-)
26738997 .. 26739595
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G304900.1

Sequence Viewer

Length: 387 bp
ACTTGTGAATTGAAATTGGATACCCGTTCCCCTGGATGGCATAAGACCATGACCAAAGTTTTGAAGAATGTCAGTGGAGTATCTTATACCATTGATGCACAAGCCGGAATAGCATGTGTTTCGGGGACGGTGGATCCGAGCACCCTTCTGACGTTATTTGCAAAAGCAGGGAAGCATGCACAGCTGCTGAGGGTTCATTCTGGACAACATTATCACTTCTCTGGTGTCAAACCTGTTGTTGACACTTACAACACACATGGAAATGGTTATGGGACTAATTACGATCGCACTCAGGATAGAACCCTTGCAACAACAACAGCCCACCACGTACACCACTACCATCGGCCGCAGCCGCGGCCGGAAGACTCCCAATGCTCCATTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

9.07

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AciI CCGC 3 cut(s) 347, 353, 355
AclWI GGATC 2 cut(s) 128, 141
AcoI YGGCCR 2 cut(s) 344, 356
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 13, 64
AjnI CCWGG 1 cut(s) 31
AjuI GAANNNNNNNTTGG 1 cut(s) 363
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 143
AlwI GGATC 2 cut(s) 128, 141
AlwNI CAGNNNCTG 1 cut(s) 187
AoxI GGCC 2 cut(s) 344, 356
ApeKI GCWGC 2 cut(s) 184, 349
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
BamHI GGATCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 171, 361
BccI CCATC 2 cut(s) 30, 348
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 1 cut(s) 33
BciVI GTATCC 1 cut(s) 13
BfuI GTATCC 1 cut(s) 13
BisI GCNGC 5 cut(s) 185, 347, 350, 353, 356
BlsI GCNGC 5 cut(s) 186, 348, 351, 354, 357
Bme1390I CCNGG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 31, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 31, 353
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 179, 305
BseX3I CGGCCG 2 cut(s) 344, 356
BseXI GCAGC 2 cut(s) 171, 361
Bsh1236I CGCG 1 cut(s) 355
Bsh1285I CGRYCG 3 cut(s) 286, 347, 359
BshFI GGCC 2 cut(s) 346, 358
BsiEI CGRYCG 3 cut(s) 286, 347, 359
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 105, 359
BslFI GGGAC 2 cut(s) 139, 286
BslI CCNNNNNNNGG 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 139, 286
BsnI GGCC 2 cut(s) 346, 358
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 133, 283
BspACI CCGC 3 cut(s) 347, 353, 355
BspANI GGCC 2 cut(s) 346, 358
BspCNI CTCAG 2 cut(s) 180, 304
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 2 cut(s) 128, 141
BssECI CCNNGG 2 cut(s) 31, 353
BssMI GATC 2 cut(s) 133, 283
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 188, 291
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 355
BstKTI GATC 2 cut(s) 136, 286
BstMBI GATC 2 cut(s) 133, 283
BstMCI CGRYCG 3 cut(s) 286, 347, 359
BstMWI GCNNNNNNNGC 4 cut(s) 110, 181, 352, 355
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 2 cut(s) 117, 179
BstSCI CCNGG 1 cut(s) 31
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 171, 361
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZI CGGCCG 2 cut(s) 344, 356
BsuI GTATCC 1 cut(s) 13
BsuRI GGCC 2 cut(s) 346, 358
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 187
Cfr42I CCGCGG 1 cut(s) 356
Csp6I GTAC 1 cut(s) 329
CviAII CATG 4 cut(s) 49, 114, 176, 257
CviJI RGCY 6 cut(s) 104, 184, 320, 346, 352, 358
CviKI_1 RGCY 6 cut(s) 104, 184, 320, 346, 352, 358
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 2 cut(s) 188, 291
DpnI GATC 2 cut(s) 135, 285
DpnII GATC 2 cut(s) 133, 283
EaeI YGGCCR 2 cut(s) 344, 356
EagI CGGCCG 2 cut(s) 344, 356
EclXI CGGCCG 2 cut(s) 344, 356
Eco52I CGGCCG 2 cut(s) 344, 356
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 4 cut(s) 52, 117, 179, 260
FaiI YATR 7 cut(s) 42, 50, 87, 115, 177, 258, 270
FaqI GGGAC 2 cut(s) 139, 286
FatI CATG 4 cut(s) 48, 113, 175, 256
Fnu4HI GCNGC 5 cut(s) 185, 347, 350, 353, 356
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 185, 347, 350, 353, 356
GluI GCNGC 5 cut(s) 185, 347, 350, 353, 356
HaeIII GGCC 2 cut(s) 346, 358
HapII CCGG 2 cut(s) 105, 359
Hin1II CATG 4 cut(s) 52, 117, 179, 260
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 365
HpaII CCGG 2 cut(s) 105, 359
Hpy166II GTNNAC 2 cut(s) 241, 331
Hpy188I TCNGA 3 cut(s) 138, 150, 386
Hpy188III TCNNGA 2 cut(s) 201, 293
Hpy8I GTNNAC 2 cut(s) 241, 331
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 152, 327
HpyCH4V TGCA 4 cut(s) 98, 161, 179, 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 181, 352, 355
HpyF3I CTNAG 2 cut(s) 188, 291
HpySE526I ACGT 2 cut(s) 152, 327
Hsp92II CATG 4 cut(s) 52, 117, 179, 260
KspI CCGCGG 1 cut(s) 356
Kzo9I GATC 2 cut(s) 133, 283
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 9 cut(s) 18, 45, 118, 153, 186, 207, 246, 278, 372
Lsp1109I GCAGC 2 cut(s) 171, 361
LweI GCATC 1 cut(s) 85
MaeII ACGT 2 cut(s) 152, 327
MalI GATC 2 cut(s) 135, 285
MboI GATC 2 cut(s) 133, 283
MboII GAAGA 2 cut(s) 76, 374
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 3 cut(s) 8, 14, 277
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 184, 355
MspI CCGG 2 cut(s) 105, 359
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 4 cut(s) 110, 181, 352, 355
NdeII GATC 2 cut(s) 133, 283
NlaIII CATG 4 cut(s) 52, 117, 179, 260
NlaIV GGNNCC 1 cut(s) 135
NspI RCATGY 2 cut(s) 117, 179
PaeI GCATGC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PkrI GCNGC 5 cut(s) 186, 348, 351, 354, 357
Ple19I CGATCG 1 cut(s) 286
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 133
PvuI CGATCG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 261
SacII CCGCGG 1 cut(s) 356
SatI GCNGC 5 cut(s) 185, 347, 350, 353, 356
Sau3AI GATC 2 cut(s) 133, 283
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 143
SetI ASST 4 cut(s) 155, 186, 235, 330
SfaNI GCATC 1 cut(s) 85
Sfr303I CCGCGG 1 cut(s) 356
SgrBI CCGCGG 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 261
SphI GCATGC 1 cut(s) 179
Sse9I AATT 3 cut(s) 8, 14, 277
SsiI CCGC 3 cut(s) 347, 353, 355
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 155, 330
TasI AATT 3 cut(s) 8, 14, 277
TauI GCSGC 3 cut(s) 349, 355, 358
TscAI CASTG 1 cut(s) 79
TseI GCWGC 2 cut(s) 184, 349
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 79
XceI RCATGY 2 cut(s) 117, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.