Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Forward (+)

1114853 .. 1115452

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1012800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATTTTGCAGAGATGTGAGTTGAAACTGGATACCGGTACCCCCGGATGGCATAAGACCATGATCAAAGTTTTGAACAAAATCAAGGTGTCTTACACCATCGACACACAAGCCGGAATTGCATATGTTTCGGGTACAATTGAACCGAACATGCTTCTCAAGTTATTAGCAAAATCAGGGAAGCATGCAGAGTTGCTCAGAGTTGATTCAGGATATAAGCATCAGTTCTACGAAGCTAAACCTGTTGCTAATTACACAAGTGGACAAGATTATGGGGCTTATTACCATAATAATCATGATTACGGATATTATGGTCACAATGGAAGCTATGAAACAACGATTCCCTACCATCATCATCCTCAGCACTACCCTAATTACTACGATACACGGGAAACTGTACCAGCGATTAGATTTCCGCAGCCACCTCCGCCAATGCAGGTCCACCCGTTTTATGATCCGGATACTCAATGCACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.45

Weight (kDa)

7.18

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	427
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	2 cut(s)	416, 428
AclWI	GGATC	1 cut(s)	449
AfaI	GTAC	3 cut(s)	40, 136, 399
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	25, 76, 143
AluBI	AGCT	2 cut(s)	236, 327
AluI	AGCT	2 cut(s)	236, 327
AlwI	GGATC	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	418
AsiGI	ACCGGT	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	3 cut(s)	42, 107, 357
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciVI	GTATCC	2 cut(s)	25, 454
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	427
BfuI	GTATCC	2 cut(s)	25, 454
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	2 cut(s)	35, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	2 cut(s)	53, 355
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	211, 374
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	36, 45, 114, 458
BslI	CCNNNNNNNGG	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	63, 454
BspACI	CCGC	2 cut(s)	416, 428
BspCNI	CTCAG	2 cut(s)	210, 373
BspEI	TCCGGA	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	63, 454
Bst4CI	ACNGT	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	197, 360
BstF5I	GGATG	2 cut(s)	53, 355
BstKTI	GATC	2 cut(s)	66, 457
BstMBI	GATC	2 cut(s)	63, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 427
BstNSI	RCATGY	2 cut(s)	154, 188
BstSCI	CCNGG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	430
BsuI	GTATCC	2 cut(s)	25, 454
BtsCI	GGATG	2 cut(s)	53, 355
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	39, 135, 398
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	4 cut(s)	61, 151, 185, 296
CviJI	RGCY	5 cut(s)	113, 236, 278, 327, 421
CviKI_1	RGCY	5 cut(s)	113, 236, 278, 327, 421
CviQI	GTAC	3 cut(s)	39, 135, 398
DdeI	CTNAG	2 cut(s)	197, 360
DpnI	GATC	2 cut(s)	65, 456
DpnII	GATC	2 cut(s)	63, 454
EciI	GGCGGA	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	439
FaeI	CATG	4 cut(s)	64, 154, 188, 299
FatI	CATG	4 cut(s)	60, 150, 184, 295
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	2 cut(s)	60, 342
Fsp4HI	GCNGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	419
HapII	CCGG	4 cut(s)	36, 45, 114, 458
Hin1II	CATG	4 cut(s)	64, 154, 188, 299
HinfI	GANTC	2 cut(s)	206, 340
HpaII	CCGG	4 cut(s)	36, 45, 114, 458
Hpy166II	GTNNAC	2 cut(s)	263, 442
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	3 cut(s)	210, 296, 458
Hpy8I	GTNNAC	2 cut(s)	263, 442
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	10, 122, 188, 436, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 427
HpyF3I	CTNAG	2 cut(s)	197, 360
Hsp92II	CATG	4 cut(s)	64, 154, 188, 299
Kpn2I	TCCGGA	1 cut(s)	457
KpnI	GGTACC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 454
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	65, 456
MboI	GATC	2 cut(s)	63, 454
MfeI	CAATTG	1 cut(s)	138
MluCI	AATT	4 cut(s)	117, 138, 250, 373
MnlI	CCTC	2 cut(s)	369, 435
MroI	TCCGGA	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	4 cut(s)	36, 45, 114, 458
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	119, 427
NciI	CCSGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	2 cut(s)	63, 454
NlaIII	CATG	4 cut(s)	64, 154, 188, 299
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	2 cut(s)	154, 188
PaeI	GCATGC	1 cut(s)	188
PagI	TCATGA	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	206, 340
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	439
RsaI	GTAC	3 cut(s)	40, 136, 399
RsaNI	GTAC	3 cut(s)	39, 135, 398
RseI	CAYNNNNRTG	1 cut(s)	476
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	2 cut(s)	63, 454
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	6 cut(s)	90, 238, 244, 329, 427, 441
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	4 cut(s)	117, 138, 250, 373
SsiI	CCGC	2 cut(s)	416, 428
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	117, 138, 250, 373
TfiI	GAWTC	2 cut(s)	206, 340
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	439
XceI	RCATGY	2 cut(s)	154, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.