Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Reverse (-)

1638177 .. 1638776

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAACGTGTATTGATTTTATGTACGTGTTTGAAATGTTTAGGAGTCTCTTATCAGATAGATGCACAAGCAGGTATGGCATATATTTCCGGGAAAGTAAACGCGAAAAAGTTACTGGAGAGGATTGTCAAGGCTGGGGAAAAAAATGCTGCAGTTTGCTGGGTGAGGGCCGGAGAGGAATATACAACTCCTTGTTATGGCAATGGGTATTATAATGACCAACAAAGATTATTATCATATGATCCTTATAATAACTATAATTATATGGGATCATATGCTCCTACTACTCCTCCTCCTCTTCCTCCTAGTTACTACCCATCTTACGGTCACCATAATCCAATGACCCATTACTATCCCCAGTTACCTCCTCCTTATACATCTTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.7

Weight (kDa)

8.2

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	213, 249
Acc36I	ACCTGC	1 cut(s)	62
AccII	CGCG	1 cut(s)	104
AclWI	GGATC	2 cut(s)	236, 277
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	197, 323
AflIII	ACRYGT	2 cut(s)	7, 26
AgsI	TTSAA	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	236, 277
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	175, 320
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 277, 304, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 323
Bse1I	ACTGG	2 cut(s)	120, 358
Bse3DI	GCAATG	1 cut(s)	208
Bse8I	GATNNNNATC	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	197, 323
BseMI	GCAATG	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	120, 358
BseRI	GAGGAG	4 cut(s)	279, 282, 285, 357
BseXI	GCAGC	1 cut(s)	136
BseYI	CCCAGC	2 cut(s)	134, 159
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	90, 171
BslI	CCNNNNNNNGG	2 cut(s)	197, 323
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	241, 269
BspANI	GGCC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	236, 277
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	120, 358
BssMI	GATC	2 cut(s)	241, 269
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	2 cut(s)	244, 272
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	241, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	170
BveI	ACCTGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	24
CviJI	RGCY	2 cut(s)	134, 170
CviKI_1	RGCY	2 cut(s)	134, 170
CviQI	GTAC	1 cut(s)	24
DpnI	GATC	2 cut(s)	243, 271
DpnII	GATC	2 cut(s)	241, 269
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
FauNDI	CATATG	2 cut(s)	238, 274
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	150
GsaI	CCCAGC	2 cut(s)	138, 163
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	90, 171
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	90, 171
HphI	GGTGA	2 cut(s)	175, 320
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	7, 26
HpyCH4V	TGCA	2 cut(s)	65, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	2 cut(s)	7, 26
Kzo9I	GATC	2 cut(s)	241, 269
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	57, 101, 103, 120, 145, 184, 371
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	7, 26
MaeIII	GTNAC	4 cut(s)	111, 308, 326, 360
MalI	GATC	2 cut(s)	243, 271
MboI	GATC	2 cut(s)	241, 269
MboII	GAAGA	1 cut(s)	290
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	9 cut(s)	114, 159, 169, 300, 303, 306, 312, 375, 378
MspI	CCGG	2 cut(s)	90, 171
MspR9I	CCNGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	91
NdeI	CATATG	2 cut(s)	238, 274
NdeII	GATC	2 cut(s)	241, 269
NmuCI	GTSAC	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	27
PsiI	TTATAA	2 cut(s)	213, 249
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	2 cut(s)	134, 159
PspPI	GGNCC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	241, 269
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	4 cut(s)	10, 29, 76, 367
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	10, 29
TasI	AATT	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	326
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.