Rh5CG322600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
35706248 .. 35708163
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG322600.1

Sequence Viewer

Length: 480 bp
ATGCCTACATGTCATGTTGATGCCTTCATAGAGATGCTCGTTGTAGGGTGTAGTTATGAACTCGGTCAACTATCTCTATGGATCTGTTTACTGAAAGTTGACACGCAATCAGGTGGATGGGAAAAGTGCCTGACCAAGATGCTGAAAAAAATCAAAGGAGCAAAGTATGCTTTAGATGTCCAAGAAGGAACGCTCCGTGTTTCTGGGAAAGTAAACCCGACGAAAGTACTGAACAAGCTAAAGAAGGCTGGGAAAGTAGCAGAGATCTTGTGGGTGAATAGTGGAGTAACTGACAGTGTCTATTTTGAAGACCCAACCTTGTATCGTAATCATTATAGTTCTTATAATAATGATTACAATTATGTGAACAATGGTTATGCAGCTGGATACCATCCTTCTTCTTCATACAGCTATCATCATCAGCTTCCTATCCCCCATCATTATCCCTATGGCGGCCATGGTTATGGTGGATTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.91

Weight (kDa)

8.55

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AciI CCGC 1 cut(s) 453
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 454
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 4 cut(s) 238, 383, 411, 424
AluI AGCT 4 cut(s) 238, 383, 411, 424
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 392
BccI CCATC 3 cut(s) 111, 399, 444
BciVI GTATCC 1 cut(s) 380
BfuI GTATCC 1 cut(s) 380
BglII AGATCT 1 cut(s) 264
BisI GCNGC 2 cut(s) 381, 454
BlsI GCNGC 2 cut(s) 382, 455
BmcAI AGTACT 1 cut(s) 228
BmsI GCATC 3 cut(s) 10, 24, 129
BpiI GAAGAC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 2 cut(s) 122, 391
BseLI CCNNNNNNNGG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 392
BseYI CCCAGC 1 cut(s) 248
BshFI GGCC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 452
BsnI GGCC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 81, 264
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 1 cut(s) 453
BspANI GGCC 1 cut(s) 456
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 2 cut(s) 81, 264
BssT1I CCWWGG 1 cut(s) 457
Bst4CI ACNGT 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 2 cut(s) 122, 391
BstKTI GATC 2 cut(s) 84, 267
BstMBI GATC 2 cut(s) 81, 264
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 2 cut(s) 81, 264
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 2 cut(s) 81, 264
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 122, 391
BtsIMutI CAGTG 1 cut(s) 301
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 9, 14, 458
CviJI RGCY 6 cut(s) 238, 248, 383, 411, 424, 456
CviKI_1 RGCY 6 cut(s) 238, 248, 383, 411, 424, 456
CviQI GTAC 1 cut(s) 227
DpnI GATC 2 cut(s) 83, 266
DpnII GATC 2 cut(s) 81, 264
EaeI YGGCCR 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 3 cut(s) 12, 17, 461
FatI CATG 3 cut(s) 8, 13, 457
Fnu4HI GCNGC 2 cut(s) 381, 454
FokI GGATG 2 cut(s) 129, 378
Fsp4HI GCNGC 2 cut(s) 381, 454
GluI GCNGC 2 cut(s) 381, 454
GsaI CCCAGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 456
Hin1II CATG 3 cut(s) 12, 17, 461
HincII GTYRAC 2 cut(s) 68, 100
HindII GTYRAC 2 cut(s) 68, 100
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 5 cut(s) 68, 89, 100, 214, 367
Hpy8I GTNNAC 5 cut(s) 68, 89, 100, 214, 367
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 4 cut(s) 34, 179, 238, 405
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 12, 17, 461
Kzo9I GATC 2 cut(s) 81, 264
LmnI GCTCC 2 cut(s) 158, 198
LpnPI CCDG 5 cut(s) 96, 143, 189, 234, 369
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 3 cut(s) 10, 24, 129
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 83, 266
MboI GATC 2 cut(s) 81, 264
MboII GAAGA 3 cut(s) 320, 390, 393
MflI RGATCY 2 cut(s) 81, 264
MluCI AATT 1 cut(s) 358
MslI CAYNNNNRTG 3 cut(s) 18, 32, 462
MspA1I CMGCKG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 167
NcoI CCATGG 1 cut(s) 457
NdeII GATC 2 cut(s) 81, 264
NlaIII CATG 3 cut(s) 12, 17, 461
NspI RCATGY 1 cut(s) 12
PciI ACATGT 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 382, 455
PscI ACATGT 1 cut(s) 8
PsiI TTATAA 1 cut(s) 345
PspFI CCCAGC 1 cut(s) 248
PsuI RGATCY 2 cut(s) 81, 264
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 3 cut(s) 18, 32, 462
SatI GCNGC 2 cut(s) 381, 454
Sau3AI GATC 2 cut(s) 81, 264
ScaI AGTACT 1 cut(s) 228
SetI ASST 6 cut(s) 115, 240, 320, 385, 413, 426
SfaNI GCATC 3 cut(s) 10, 24, 129
SmiMI CAYNNNNRTG 3 cut(s) 18, 32, 462
Sse9I AATT 1 cut(s) 358
SsiI CCGC 1 cut(s) 453
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 296
TaqII GACCGA 1 cut(s) 53
TasI AATT 1 cut(s) 358
TatI WGTACW 1 cut(s) 226
TauI GCSGC 1 cut(s) 456
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 16, 72, 393
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 296
XceI RCATGY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.