Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392657.1

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Reverse (-)

525 .. 1162

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggttttgcagacttgtcaattaaagctggataatagcgccaagggatggcacaagaccatttccaaagttttgaaaactatcgagggagtatcttacagcattgatatggaaaatggaagcgtaactgttacgggttggattgacccagaaacccttatggctcgattagcgaaatctgggaagaaaatagagctggttagggttgatacaggagttcttcgtgaggcgcggataaaaaaactgaagcagcaacagcagttacaacaacaatattattatggacatggatacccttttggttatgttaatggttattatcctcagcaatatggatactataatcagagtggagctggatacccttatggaacaacaccagattactatcgcaatcatcatcagctctaccctaattattatcagcagcagccagttaggcccactgcgccacatgcgccacctgcaccacgattaggttttccacagccaccaccgccgttggagattcacccgttttacgatccagagacacaatgcacgattatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.03

Weight (kDa)

9.04

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
Acc36I	ACCTGC	1 cut(s)	472
AccB7I	CCANNNNNTGG	1 cut(s)	48
AccII	CGCG	1 cut(s)	232
AciI	CCGC	2 cut(s)	232, 497
AclWI	GGATC	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	48, 476
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	4 cut(s)	28, 196, 356, 406
AluI	AGCT	4 cut(s)	28, 196, 356, 406
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	3 cut(s)	250, 427, 430
AspLEI	GCGC	4 cut(s)	41, 232, 451, 460
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	503
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	262, 439, 442
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	484
BciVI	GTATCC	3 cut(s)	284, 329, 353
BcoDI	GTCTC	1 cut(s)	524
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	3 cut(s)	284, 329, 353
BglI	GCCNNNNNGGC	1 cut(s)	439
BisI	GCNGC	3 cut(s)	251, 428, 431
BlsI	GCNGC	3 cut(s)	252, 429, 432
BmgT120I	GGNCC	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 476
Bse1I	ACTGG	1 cut(s)	434
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	48, 476
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	262, 439, 442
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	48, 476
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	2 cut(s)	232, 497
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	523
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	4 cut(s)	41, 232, 451, 460
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	8 cut(s)	170, 256, 439, 448, 455, 457, 464, 496
BstNSI	RCATGY	1 cut(s)	458
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	3 cut(s)	262, 439, 442
BsuI	GTATCC	3 cut(s)	284, 329, 353
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	472
CfoI	GCGC	4 cut(s)	41, 232, 451, 460
Cfr13I	GGNCC	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	2 cut(s)	287, 455
CviJI	RGCY	8 cut(s)	28, 164, 196, 356, 406, 433, 442, 490
CviKI_1	RGCY	8 cut(s)	28, 164, 196, 356, 406, 433, 442, 490
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	290, 458
FatI	CATG	2 cut(s)	286, 454
Fnu4HI	GCNGC	3 cut(s)	251, 428, 431
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	251, 428, 431
GlaI	GCGC	4 cut(s)	40, 231, 450, 459
GluI	GCNGC	3 cut(s)	251, 428, 431
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	442
HhaI	GCGC	4 cut(s)	41, 232, 451, 460
Hin1II	CATG	2 cut(s)	290, 458
Hin6I	GCGC	4 cut(s)	39, 230, 449, 458
HinP1I	GCGC	4 cut(s)	39, 230, 449, 458
HinfI	GANTC	1 cut(s)	508
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	224, 527
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	3 cut(s)	10, 467, 540
HpyF10VI	GCNNNNNNNGC	8 cut(s)	170, 256, 439, 448, 455, 457, 464, 496
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	290, 458
HspAI	GCGC	4 cut(s)	39, 230, 449, 458
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	3 cut(s)	262, 439, 442
MaeIII	GTNAC	3 cut(s)	124, 130, 261
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	2 cut(s)	196, 212
MluCI	AATT	2 cut(s)	20, 415
MmeI	TCCRAC	2 cut(s)	119, 483
MnlI	CCTC	3 cut(s)	79, 220, 333
MseI	TTAA	2 cut(s)	23, 309
MslI	CAYNNNNRTG	2 cut(s)	107, 545
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	8 cut(s)	170, 256, 439, 448, 455, 457, 464, 496
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	2 cut(s)	290, 458
NspI	RCATGY	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	508
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	252, 429, 432
PspPI	GGNCC	1 cut(s)	441
RseI	CAYNNNNRTG	2 cut(s)	107, 545
SaqAI	TTAA	2 cut(s)	23, 309
SatI	GCNGC	3 cut(s)	251, 428, 431
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	1 cut(s)	441
SetI	ASST	6 cut(s)	30, 198, 358, 408, 466, 481
SmiMI	CAYNNNNRTG	2 cut(s)	107, 545
Sse9I	AATT	2 cut(s)	20, 415
SsiI	CCGC	2 cut(s)	232, 497
SspI	AATATT	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	84, 166
TasI	AATT	2 cut(s)	20, 415
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	2 cut(s)	23, 309
Tru9I	TTAA	2 cut(s)	23, 309
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	3 cut(s)	250, 427, 430
TspRI	CASTG	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	48
XceI	RCATGY	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.