Prupe.5G226000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001391
Physical Location & Seq
Forward (+)
17436205 .. 17438187
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G226000.1

Sequence Viewer

Length: 435 bp
ATGTTGTCTACAATGGAATCTCGATCTTACATGACGTGTGGACTGAAAGTGGACACCAAGTCCGGCGGATGGCATAAGTGCCTAACGAAAATGCTGAAAAAGATCCGAGGAGCGTCATACAATGTAGATGCAGAAGCAGGTATGGCATATATTTCTGGTAAAGTAAACCCGACCAAGTTACTGAGAAGGCTAGTGCAGGCTGGGAAAGAGGCAGAAATCTGCTGGGTCAGGACTGGAGATCAATGTACCAACTATGACGGCTATGGCGAGGGCAACATTGTCAATGCCAATGGGTATTATGACCATCATTCATATTATAGGGCTGGAGCAGTTGACCCATATATGGATGGGTATAATGGTCCTTATGGACAAAGATCATCATATTACCCATACGGCCATTACTATCCCCAGGCGCCACCATACACCTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.3

Weight (kDa)

8.76

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 8
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 394
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 69, 343
AflIII ACRYGT 1 cut(s) 35
AhdI GACNNNNNGTC 1 cut(s) 58
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 1 cut(s) 408
AlwI GGATC 1 cut(s) 97
AoxI GGCC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 359
AvaII GGWCC 1 cut(s) 359
BanI GGYRCC 1 cut(s) 412
BccI CCATC 3 cut(s) 63, 312, 341
BceAI ACGGC 2 cut(s) 274, 409
BciT130I CCWGG 1 cut(s) 410
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 359
BmeRI GACNNNNNGTC 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 2 cut(s) 255, 345
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 106, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 343
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 106, 408
BseGI GGATG 2 cut(s) 74, 352
BseLI CCNNNNNNNGG 2 cut(s) 69, 343
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 123
BseYI CCCAGC 2 cut(s) 200, 222
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 69, 343
BsnI GGCC 1 cut(s) 396
Bsp143I GATC 4 cut(s) 23, 102, 238, 374
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 412
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 106, 408
BssMI GATC 4 cut(s) 23, 102, 238, 374
BssNI GRCGYC 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 74, 352
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 4 cut(s) 26, 105, 241, 377
BstMBI GATC 4 cut(s) 23, 102, 238, 374
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 1 cut(s) 396
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 2 cut(s) 74, 352
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 359
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 190, 200, 261, 323, 396
CviKI_1 RGCY 5 cut(s) 190, 200, 261, 323, 396
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 182
DinI GGCGCC 1 cut(s) 414
DpnI GATC 4 cut(s) 25, 104, 240, 376
DpnII GATC 4 cut(s) 23, 102, 238, 374
DriI GACNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 394
Eam1105I GACNNNNNGTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 408
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
FaeI CATG 1 cut(s) 34
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 8
FokI GGATG 2 cut(s) 81, 359
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 414
GsaI CCCAGC 2 cut(s) 204, 226
GsuI CTGGAG 2 cut(s) 255, 345
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 63
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 5 cut(s) 9, 41, 52, 166, 334
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 21, 229
Hpy8I GTNNAC 5 cut(s) 9, 41, 52, 166, 334
HpyAV CCTTC 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 131, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 413
KasI GGCGCC 1 cut(s) 412
Kzo9I GATC 4 cut(s) 23, 102, 238, 374
LmnI GCTCC 2 cut(s) 110, 326
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 177
MalI GATC 4 cut(s) 25, 104, 240, 376
MboI GATC 4 cut(s) 23, 102, 238, 374
MflI RGATCY 1 cut(s) 102
Mly113I GGCGCC 1 cut(s) 413
MnlI CCTC 3 cut(s) 101, 202, 262
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 143
NarI GGCGCC 1 cut(s) 413
NdeII GATC 4 cut(s) 23, 102, 238, 374
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 1 cut(s) 17
PluTI GGCGCC 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 2 cut(s) 200, 222
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
Sau3AI GATC 4 cut(s) 23, 102, 238, 374
Sau96I GGNCC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 410
SetI ASST 3 cut(s) 38, 142, 428
SfaNI GCATC 1 cut(s) 118
SfoI GGCGCC 1 cut(s) 414
SinI GGWCC 1 cut(s) 359
SsiI CCGC 1 cut(s) 66
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 408
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 22
TfiI GAWTC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.