Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Reverse (-)

26736275 .. 26737383

Gene Structure 1109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G304800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACCAAAGTTTTAAGCAAAATCAAGGGGTTGTCTTACACCATTGATGCACAAGCCGGGATTGCGCATGTTTCGGGCACAATCGAGCCGGACACCCTTCTCAAGTTATTATCAAAATCAGGGAAGCATGCAGAGCTGCTTAGGATTGACTCGGGATATAAGAATCAGTTCTACACGGCAAAGCCTGTTGCTAATTACAGAAATGGACATGGTTATGGGCAGGGTTATTATAATAATCATGATTATGGATATTATAATCCCAATGGAACAGGTAATTCCTACCCTATAGCAACAGATCCCTACCATCATCAACGGTACTACCCTAATTACCATGAGCGGACGCCACAACCCCTGAGTTTCCCACAGCCACCGCCGCGGATGGAGATTCACCCATTTTATGATCCGGACACCCAATGTACCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.19

Weight (kDa)

8.53

Isoelectric Point (pI)

22.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 255
Acc16I	TGCGCA	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	337
AccII	CGCG	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	4 cut(s)	337, 371, 374, 376
AclWI	GGATC	2 cut(s)	290, 395
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	2 cut(s)	317, 418
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
AlwI	GGATC	2 cut(s)	290, 395
Ama87I	CYCGRG	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	3 cut(s)	312, 373, 428
BceAI	ACGGC	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	2 cut(s)	137, 374
BlsI	GCNGC	2 cut(s)	138, 375
Bme1390I	CCNGG	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	403
BseAI	TCCGGA	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	57, 89, 404
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	295, 400
BspACI	CCGC	4 cut(s)	337, 371, 374, 376
BspCNI	CTCAG	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	238
BspPI	GGATC	2 cut(s)	290, 395
BsrBI	CCGCTC	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	2 cut(s)	295, 400
BssNI	GRCGYC	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	140, 353
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	298, 403
BstMBI	GATC	2 cut(s)	295, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 133, 373
BstNSI	RCATGY	2 cut(s)	71, 131
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	67
Cfr42I	CCGCGG	1 cut(s)	377
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	316, 417
CviAII	CATG	6 cut(s)	68, 128, 209, 239, 332, 424
CviJI	RGCY	5 cut(s)	56, 88, 136, 184, 367
CviKI_1	RGCY	5 cut(s)	56, 88, 136, 184, 367
CviQI	GTAC	2 cut(s)	316, 417
DdeI	CTNAG	2 cut(s)	140, 353
DpnI	GATC	2 cut(s)	297, 402
DpnII	GATC	2 cut(s)	295, 400
Eco88I	CYCGRG	1 cut(s)	151
FaeI	CATG	6 cut(s)	71, 131, 212, 242, 335, 427
FatI	CATG	6 cut(s)	67, 127, 208, 238, 331, 423
Fnu4HI	GCNGC	2 cut(s)	137, 374
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	137, 374
FspI	TGCGCA	1 cut(s)	66
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	137, 374
HapII	CCGG	3 cut(s)	57, 89, 404
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	6 cut(s)	71, 131, 212, 242, 335, 427
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	3 cut(s)	149, 163, 385
HpaII	CCGG	3 cut(s)	57, 89, 404
HphI	GGTGA	1 cut(s)	380
Hpy188III	TCNNGA	3 cut(s)	153, 239, 404
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	50, 131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 133, 373
HpyF3I	CTNAG	2 cut(s)	140, 353
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	6 cut(s)	71, 131, 212, 242, 335, 427
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	403
KspI	CCGCGG	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	295, 400
LpnPI	CCDG	8 cut(s)	70, 102, 105, 198, 206, 255, 365, 417
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	1 cut(s)	37
MalI	GATC	2 cut(s)	297, 402
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	2 cut(s)	295, 400
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	193, 274, 325
MlyI	GAGTC	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	2 cut(s)	213, 243
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	3 cut(s)	57, 89, 404
MspR9I	CCNGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	3 cut(s)	62, 133, 373
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	295, 400
NlaIII	CATG	6 cut(s)	71, 131, 212, 242, 335, 427
NsbI	TGCGCA	1 cut(s)	66
NspI	RCATGY	2 cut(s)	71, 131
PaeI	GCATGC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	163, 385
PkrI	GCNGC	2 cut(s)	138, 375
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PsiI	TTATAA	2 cut(s)	231, 255
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	317, 418
RsaNI	GTAC	2 cut(s)	316, 417
RseI	CAYNNNNRTG	2 cut(s)	213, 243
SacII	CCGCGG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	137, 374
Sau3AI	GATC	2 cut(s)	295, 400
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	2 cut(s)	138, 274
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	285
Sfr303I	CCGCGG	1 cut(s)	377
SgrBI	CCGCGG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	213, 243
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	3 cut(s)	193, 274, 325
SsiI	CCGC	4 cut(s)	337, 371, 374, 376
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	193, 274, 325
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	2 cut(s)	163, 385
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	1 cut(s)	136
XceI	RCATGY	2 cut(s)	71, 131
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.