Rh2CG637900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001391
Physical Location & Seq
Reverse (-)
80928583 .. 80929930
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG637900.1

Sequence Viewer

Length: 456 bp
ATGGGGGAGATCAATAGTGGTTATATGCGTTGTGAACTGAAAGTGGATACCAGTTCCAAGGGATGGCATATGACCATGATCAAAGTTTTGAATAGTATCAAAGGAGTGAAATACTACATTGATGCAGAAGCTGGAATCGCATATGTTGCTGGTACTATCCACCCAGACACCCTTCTGAGAGTGTTAGCAAAGTCTGGAAGGCATGCTCAGCTGCTTAGGGTTGATTCAGGATATCGTCAACAAGTCTTGAAGGAGAAAAGTACTAGTACTAGCTATGGTTATGGCCCCAACGTTCAGGGGAAAACTAGTAGTAGCTCTCATGGTCCTAACTGTAACAATTATGGGGGGGATTCTTATGGTCAACTTCTCAGTAGGAGCTACGAACAACTAGACAATCAGTCGACTATGGTGAGTCACCGATTTTATGATGCAGACACCCAGTGCACCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.72

Weight (kDa)

8.72

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 63
AccI GTMKAC 1 cut(s) 401
AclI AACGTT 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 441
AfaI GTAC 3 cut(s) 154, 262, 268
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 2 cut(s) 91, 250
AhdI GACNNNNNGTC 1 cut(s) 397
AhlI ACTAGT 2 cut(s) 263, 305
AluBI AGCT 5 cut(s) 131, 211, 273, 315, 378
AluI AGCT 5 cut(s) 131, 211, 273, 315, 378
Alw21I GWGCWC 1 cut(s) 446
Alw44I GTGCAC 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 131
AoxI GGCC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 284, 323
AsuHPI GGTGA 2 cut(s) 407, 421
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 57
BciVI GTATCC 1 cut(s) 40
BclI TGATCA 1 cut(s) 78
BcuI ACTAGT 2 cut(s) 263, 305
BfaI CTAG 4 cut(s) 264, 270, 306, 389
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 213
BmcAI AGTACT 2 cut(s) 262, 268
Bme18I GGWCC 1 cut(s) 323
BmeRI GACNNNNNGTC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 284, 323
BmiI GGNNCC 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 2 cut(s) 112, 418
BmuI ACTGGG 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 51, 439
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 3 cut(s) 167, 221, 382
BseNI ACTGG 2 cut(s) 51, 439
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 63
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 446
Bsp143I GATC 2 cut(s) 9, 78
Bsp1720I GCTNAGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 3 cut(s) 168, 220, 381
BspLI GGNNCC 1 cut(s) 286
BsrI ACTGG 2 cut(s) 51, 439
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 9, 78
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 4 cut(s) 176, 207, 215, 368
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 2 cut(s) 12, 81
BstMBI GATC 2 cut(s) 9, 78
BstMWI GCNNNNNNNGC 3 cut(s) 137, 146, 208
BstNSI RCATGY 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 198
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 446
Cac8I GCNNGC 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 284, 323
Csp6I GTAC 3 cut(s) 153, 261, 267
CviAII CATG 3 cut(s) 76, 203, 320
CviJI RGCY 6 cut(s) 131, 211, 273, 285, 315, 378
CviKI_1 RGCY 6 cut(s) 131, 211, 273, 285, 315, 378
CviQI GTAC 3 cut(s) 153, 261, 267
DdeI CTNAG 4 cut(s) 176, 207, 215, 368
DpnI GATC 2 cut(s) 11, 80
DpnII GATC 2 cut(s) 9, 78
DraIII CACNNNGTG 1 cut(s) 441
DriI GACNNNNNGTC 1 cut(s) 397
Eam1105I GACNNNNNGTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 57
Eco32I GATATC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 323
EcoRV GATATC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 79, 206, 323
FatI CATG 3 cut(s) 75, 202, 319
FauNDI CATATG 2 cut(s) 69, 142
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 4 cut(s) 264, 270, 306, 389
GluI GCNGC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 3 cut(s) 79, 206, 323
HincII GTYRAC 3 cut(s) 239, 362, 402
HindII GTYRAC 3 cut(s) 239, 362, 402
HinfI GANTC 4 cut(s) 135, 224, 350, 412
HphI GGTGA 2 cut(s) 407, 421
Hpy166II GTNNAC 5 cut(s) 35, 239, 362, 402, 444
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 195, 228, 247
Hpy8I GTNNAC 5 cut(s) 35, 239, 362, 402, 444
HpyAV CCTTC 3 cut(s) 182, 192, 244
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 125, 431, 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 146, 208
HpyF3I CTNAG 4 cut(s) 176, 207, 215, 368
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 79, 206, 323
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 9, 78
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 8 cut(s) 64, 117, 135, 177, 180, 213, 281, 452
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 2 cut(s) 112, 418
MaeI CTAG 4 cut(s) 264, 270, 306, 389
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 332, 413
MalI GATC 2 cut(s) 11, 80
MboI GATC 2 cut(s) 9, 78
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 421
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 211
MwoI GCNNNNNNNGC 3 cut(s) 137, 146, 208
NdeI CATATG 2 cut(s) 69, 142
NdeII GATC 2 cut(s) 9, 78
NlaIII CATG 3 cut(s) 79, 206, 323
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 1 cut(s) 206
PaeI GCATGC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 135, 224, 350
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
Psp1406I AACGTT 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 284, 323
PstNI CAGNNNCTG 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 3 cut(s) 154, 262, 268
RsaNI GTAC 3 cut(s) 153, 261, 267
RseI CAYNNNNRTG 1 cut(s) 449
SalI GTCGAC 1 cut(s) 400
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 2 cut(s) 9, 78
Sau96I GGNCC 2 cut(s) 284, 323
ScaI AGTACT 2 cut(s) 262, 268
SchI GAGTC 1 cut(s) 421
SduI GDGCHC 1 cut(s) 446
SetI ASST 6 cut(s) 133, 213, 275, 294, 317, 380
SfaNI GCATC 2 cut(s) 112, 418
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 449
SpeI ACTAGT 2 cut(s) 263, 305
SphI GCATGC 1 cut(s) 206
Sse9I AATT 1 cut(s) 337
SspMI CTAG 4 cut(s) 264, 270, 306, 389
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 401
TasI AATT 1 cut(s) 337
TatI WGTACW 2 cut(s) 260, 266
TfiI GAWTC 3 cut(s) 135, 224, 350
TscAI CASTG 1 cut(s) 446
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 413
TspRI CASTG 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 63
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 323
XceI RCATGY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 4 cut(s) 264, 270, 306, 389
ZrmI AGTACT 2 cut(s) 262, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.