Rh5BG290600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001391
Physical Location & Seq
Reverse (-)
36945868 .. 36958461
12594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG290600.1

Sequence Viewer

Length: 747 bp
ATGCATGTGGTACAATATGCACCGGAAGAAGCTTGGATGGATTGGGAACCTGTTTTAAATAATATGCATTTGGGTGCACGAGCAAGTTACTTTGCGCTCATTGTGAGCTGTCTACTGAAAGTTGACACGCAATCTGGTGGATGGGAAAAGTGCCTGACCAAGATGCTGAAAAAAATCAGAGGAGCAAAGTATTCTTTAAACGTCCAAGAAGGAACGCTCCATGTTTCTGGGAAAGTAAACCCGACGAAAGTACTGAACAGGATAAAGAAGGCTGGGAAAGTAGCAGAGATCTTGTGGGTGAATAGTGGAGTAACTGACAGTGTCTATTTTGAAGATCCAACCTCACATTTCAACTTCAACGCTCTGTTTCATGCTTCCGATAATGAGAAGCGCCATGGTCACAACCTCAAGACCTTGAAGCATGAAGAGCAGAAGCCGTTGGAGCATGACGGGCAGAGTGAAAGATATTTTGGAGAGGAGGAGGAGGCCATTGGAGAGAGCTTCGAGTTGGACTCGCCGAAATCTGACGTGAAATCGACCACCGGCACAGGAGCTGTGGCAGTGTCCGGAGTTAGACGAGGTGACGTTGAACAAGAATTGGAGATCTCTTCCTTGAAGCCTTTCATGAATGAGTCTGTTGCTGGAATGGGATCAAAATTGTTGAGGAAGTCCAGTAGGTCTTCTCTAAGTCACTTAACTTCGACCGAGTCTCCGAGTCGAACTTGTAGCTCCCAACTTGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.47

Weight (kDa)

6.56

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 566
AclWI GGATC 2 cut(s) 329, 658
AfaI GTAC 2 cut(s) 12, 252
AgsI TTSAA 6 cut(s) 332, 352, 358, 418, 590, 616
AjiI CACGTC 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 5 cut(s) 32, 108, 501, 554, 729
AluI AGCT 5 cut(s) 32, 108, 501, 554, 729
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 714
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 2 cut(s) 329, 658
AlwNI CAGNNNCTG 1 cut(s) 554
Aor13HI TCCGGA 1 cut(s) 566
AoxI GGCC 1 cut(s) 486
ApaLI GTGCAC 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 620
AspLEI GCGC 2 cut(s) 97, 393
AsuHPI GGTGA 2 cut(s) 310, 593
BaeGI GKGCMC 1 cut(s) 79
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 2 cut(s) 31, 135
BceAI ACGGC 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 714
BfoI RGCGCY 1 cut(s) 394
BglII AGATCT 2 cut(s) 288, 603
BmcAI AGTACT 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 672
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 2 cut(s) 22, 566
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 566
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 42, 146
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 4 cut(s) 195, 491, 494, 497
BseSI GKGCMC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 1 cut(s) 488
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 3 cut(s) 23, 543, 567
BsmAI GTCTC 1 cut(s) 714
BsnI GGCC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 566
Bsp143I GATC 4 cut(s) 288, 334, 603, 650
Bsp19I CCATGG 1 cut(s) 394
BspANI GGCC 1 cut(s) 488
BspEI TCCGGA 1 cut(s) 566
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 2 cut(s) 329, 658
BspQI GCTCTTC 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 1 cut(s) 672
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 288, 334, 603, 650
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 394
Bst2BI CACGAG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 420, 613
BstDEI CTNAG 1 cut(s) 686
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 42, 146
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 2 cut(s) 97, 393
BstKTI GATC 4 cut(s) 291, 337, 606, 653
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 4 cut(s) 288, 334, 603, 650
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 3 cut(s) 427, 442, 451
BstNSI RCATGY 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 3 cut(s) 288, 334, 603
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 288, 334, 603
BsuRI GGCC 1 cut(s) 488
BtgI CCRYGG 1 cut(s) 394
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 2 cut(s) 42, 146
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 325, 567
CaiI CAGNNNCTG 1 cut(s) 554
CciI TCATGA 1 cut(s) 624
CfoI GCGC 2 cut(s) 97, 393
Cfr10I RCCGGY 1 cut(s) 542
Csp6I GTAC 2 cut(s) 11, 251
CviAII CATG 7 cut(s) 5, 221, 371, 395, 422, 446, 625
CviJI RGCY 9 cut(s) 32, 108, 272, 436, 488, 501, 554, 619, 729
CviKI_1 RGCY 9 cut(s) 32, 108, 272, 436, 488, 501, 554, 619, 729
CviQI GTAC 2 cut(s) 11, 251
DdeI CTNAG 1 cut(s) 686
DpnI GATC 4 cut(s) 290, 336, 605, 652
DpnII GATC 4 cut(s) 288, 334, 603, 650
DraI TTTAAA 2 cut(s) 57, 198
Eam1104I CTCTTC 2 cut(s) 420, 613
EarI CTCTTC 2 cut(s) 420, 613
Eco130I CCWWGG 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 2 cut(s) 6, 69
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 7 cut(s) 8, 224, 374, 398, 425, 449, 628
FaiI YATR 9 cut(s) 6, 18, 65, 222, 372, 396, 423, 447, 626
FatI CATG 7 cut(s) 4, 220, 370, 394, 421, 445, 624
FblI GTMKAC 1 cut(s) 112
FokI GGATG 2 cut(s) 49, 153
GlaI GCGC 2 cut(s) 96, 392
GsaI CCCAGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 1 cut(s) 488
HapII CCGG 3 cut(s) 23, 543, 567
HhaI GCGC 2 cut(s) 97, 393
Hin1II CATG 7 cut(s) 8, 224, 374, 398, 425, 449, 628
Hin6I GCGC 2 cut(s) 95, 391
HinP1I GCGC 2 cut(s) 95, 391
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 4 cut(s) 512, 632, 707, 715
HpaII CCGG 3 cut(s) 23, 543, 567
HphI GGTGA 2 cut(s) 310, 593
Hpy166II GTNNAC 4 cut(s) 77, 113, 124, 238
Hpy188I TCNGA 4 cut(s) 179, 379, 526, 714
Hpy188III TCNNGA 4 cut(s) 409, 567, 625, 744
Hpy8I GTNNAC 4 cut(s) 77, 113, 124, 238
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 203, 262
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 3 cut(s) 201, 528, 585
HpyCH4V TGCA 4 cut(s) 4, 20, 67, 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 427, 442, 451
HpyF3I CTNAG 1 cut(s) 686
HpySE526I ACGT 3 cut(s) 201, 528, 585
Hsp92II CATG 7 cut(s) 8, 224, 374, 398, 425, 449, 628
HspAI GCGC 2 cut(s) 95, 391
Kpn2I TCCGGA 1 cut(s) 566
Kzo9I GATC 4 cut(s) 288, 334, 603, 650
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 5 cut(s) 182, 222, 442, 551, 734
LweI GCATC 1 cut(s) 153
MaeII ACGT 3 cut(s) 201, 528, 585
MaeIII GTNAC 5 cut(s) 86, 310, 398, 581, 689
MalI GATC 4 cut(s) 290, 336, 605, 652
MboI GATC 4 cut(s) 288, 334, 603, 650
MboII GAAGA 5 cut(s) 38, 344, 437, 600, 672
MflI RGATCY 3 cut(s) 288, 334, 603
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 596, 656
MlyI GAGTC 4 cut(s) 506, 641, 716, 724
MmeI TCCRAC 3 cut(s) 362, 420, 489
MnlI CCTC 9 cut(s) 173, 352, 416, 469, 472, 475, 478, 572, 657
Mph1103I ATGCAT 2 cut(s) 6, 69
MroI TCCGGA 1 cut(s) 566
MroXI GAANNNNTTC 1 cut(s) 620
MseI TTAA 3 cut(s) 56, 197, 695
MslI CAYNNNNRTG 1 cut(s) 72
MspI CCGG 3 cut(s) 23, 543, 567
MwoI GCNNNNNNNGC 3 cut(s) 427, 442, 451
NcoI CCATGG 1 cut(s) 394
NdeII GATC 4 cut(s) 288, 334, 603, 650
NlaIII CATG 7 cut(s) 8, 224, 374, 398, 425, 449, 628
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 3 cut(s) 398, 581, 689
NsiI ATGCAT 2 cut(s) 6, 69
NspI RCATGY 1 cut(s) 8
PagI TCATGA 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 620
PflFI GACNNNGTC 2 cut(s) 320, 706
PleI GAGTC 4 cut(s) 506, 640, 715, 723
PpsI GAGTC 4 cut(s) 506, 640, 715, 723
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 3 cut(s) 288, 334, 603
PsyI GACNNNGTC 2 cut(s) 320, 706
RsaI GTAC 2 cut(s) 12, 252
RsaNI GTAC 2 cut(s) 11, 251
RseI CAYNNNNRTG 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 3 cut(s) 56, 197, 695
Sau3AI GATC 4 cut(s) 288, 334, 603, 650
ScaI AGTACT 1 cut(s) 252
SchI GAGTC 4 cut(s) 506, 641, 716, 724
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 2 cut(s) 596, 656
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 3 cut(s) 204, 531, 588
TaqI TCGA 4 cut(s) 504, 536, 701, 718
TaqII GACCGA 1 cut(s) 719
TasI AATT 2 cut(s) 596, 656
TatI WGTACW 1 cut(s) 250
Tru1I TTAA 3 cut(s) 56, 197, 695
Tru9I TTAA 3 cut(s) 56, 197, 695
TscAI CASTG 2 cut(s) 325, 567
TseFI GTSAC 3 cut(s) 398, 581, 689
Tsp45I GTSAC 3 cut(s) 398, 581, 689
TspDTI ATGAA 4 cut(s) 359, 438, 613, 641
TspRI CASTG 2 cut(s) 325, 567
Tth111I GACNNNGTC 2 cut(s) 320, 706
VneI GTGCAC 1 cut(s) 75
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 252
Zsp2I ATGCAT 2 cut(s) 6, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.