Rh7CG023700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001391
Physical Location & Seq
Reverse (-)
1683302 .. 1696711
13410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG023700.1

Sequence Viewer

Length: 831 bp
ATGGTCATGACCATTGCTAGCCTTGTGGCTAATTGTCTCTTTCTTTCAGTTGCTTTCGCTTTGGCGCTTGGAGTGCCGCCTTGGACAGAGATCCCTATGGTTGCTATCGGGGATGGTAGGTGTGTTTGCTTGGCTGATCTGAGGTCGAGATCCGATTGGATGAATCTGTGGGGGTCTGTGGCGGATCGGCGCGTCTGGATCTTGGATAGAGGTCGCACGGCTGCTGACTATGTTGAGAGTTTTACAGTAGACATGAATGGAGGTTGGGAACTACGAGTTTGGGTCTCCTCGGATTATTGCTGGTTCGCAGCGGCTAGTGTTGGTGTCTCTGTTCTCGATCTGGTGTTTGCAAAGGCCAACGTTGGTGATTGGAGGACCGATCCAGGCCAGAATGCTCCAGAGGTGATGGCTGCGAGGTCTGACATTGGTGTCGGCGAAGATCGCTGGCAGAACAGGGGTGAGTGCGGGAGTATGACTTGTGGATTGAAACTGGACCTCTCATCTAATGGATGGTACAAGTACCTGACGAAATTGCTGAAAAACATCGCAGGAGTCTCTTATCTGATAGATGCACAAGCAGGTATGGCATATATTTCCGGGAAAGTAAACGCGAAAAAGTTACTGGAGAGGATTGTCAAGGCTGGGGAAAAAGATGCTGCAGTTTGCTGGGTGAGGACCGGAGAGGAATATACAACTCCTTGTTATGGCAATGGTGCTTCATTCTTGTCCATGCAATCAGTTCACGCAGATCCAGCACCAAGAAAGCTAGGAGCAATTCCCAGTCCTCCACCTCCACCGAGTAGCGCCATACCGCATGGCCCTATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

29.79

Weight (kDa)

6.15

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 249
AccII CGCG 2 cut(s) 192, 611
AciI CCGC 5 cut(s) 77, 182, 311, 465, 812
AclI AACGTT 1 cut(s) 360
AclWI GGATC 6 cut(s) 85, 144, 192, 206, 374, 743
AfaI GTAC 2 cut(s) 515, 521
AfiI CCNNNNNNNGG 1 cut(s) 704
AgsI TTSAA 1 cut(s) 487
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 766
AluI AGCT 1 cut(s) 766
Alw26I GTCTC 4 cut(s) 41, 289, 331, 559
AlwI GGATC 6 cut(s) 85, 144, 192, 206, 374, 743
AoxI GGCC 3 cut(s) 354, 385, 817
ApeKI GCWGC 4 cut(s) 221, 308, 410, 656
AspLEI GCGC 3 cut(s) 67, 192, 806
AspS9I GGNCC 4 cut(s) 375, 493, 675, 818
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 4 cut(s) 377, 415, 470, 682
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 3 cut(s) 375, 493, 675
BbvI GCAGC 4 cut(s) 208, 320, 397, 643
BccI CCATC 3 cut(s) 107, 400, 504
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 384
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 4 cut(s) 41, 289, 331, 559
BfaI CTAG 3 cut(s) 18, 315, 767
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 2 cut(s) 68, 807
BfuAI ACCTGC 1 cut(s) 569
BisI GCNGC 6 cut(s) 77, 222, 309, 312, 411, 657
BlsI GCNGC 6 cut(s) 78, 223, 310, 313, 412, 658
Bme1390I CCNGG 2 cut(s) 384, 598
Bme18I GGWCC 3 cut(s) 375, 493, 675
BmgT120I GGNCC 4 cut(s) 375, 493, 675, 818
BmrFI CCNGG 2 cut(s) 384, 598
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 559, 643
BmtI GCTAGC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 774
BpmI CTGGAG 2 cut(s) 381, 644
BpuMI CCSGG 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 80, 288
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse1I ACTGG 3 cut(s) 495, 627, 780
Bse3DI GCAATG 2 cut(s) 12, 715
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 80, 288
BseGI GGATG 3 cut(s) 118, 165, 515
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMI GCAATG 2 cut(s) 12, 715
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 3 cut(s) 495, 627, 780
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 4 cut(s) 208, 320, 397, 643
BseYI CCCAGC 2 cut(s) 641, 666
Bsh1236I CGCG 2 cut(s) 192, 611
BshFI GGCC 3 cut(s) 356, 387, 819
BsiSI CCGG 2 cut(s) 597, 678
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 4 cut(s) 41, 289, 331, 559
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 3 cut(s) 356, 387, 819
Bso31I GGTCTC 1 cut(s) 289
Bsp143I GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
BspACI CCGC 5 cut(s) 77, 182, 311, 465, 812
BspANI GGCC 3 cut(s) 356, 387, 819
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 2 cut(s) 192, 611
BspHI TCATGA 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 569
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 6 cut(s) 85, 144, 192, 206, 374, 743
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 2 cut(s) 12, 715
BsrI ACTGG 3 cut(s) 495, 627, 780
BssECI CCNNGG 2 cut(s) 80, 288
BssMI GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 19, 446
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 118, 165, 515
BstFNI CGCG 2 cut(s) 192, 611
BstH2I RGCGCY 2 cut(s) 68, 807
BstHHI GCGC 3 cut(s) 67, 192, 806
BstKTI GATC 9 cut(s) 93, 139, 152, 187, 201, 340, 382, 442, 751
BstMAI GTCTC 4 cut(s) 41, 289, 331, 559
BstMBI GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
BstMWI GCNNNNNNNGC 4 cut(s) 73, 441, 584, 752
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 382, 596
BstSFI CTRYAG 1 cut(s) 657
BstUI CGCG 2 cut(s) 192, 611
BstV1I GCAGC 4 cut(s) 208, 320, 397, 643
BstX2I RGATCY 4 cut(s) 90, 149, 198, 748
BstYI RGATCY 4 cut(s) 90, 149, 198, 748
BsuRI GGCC 3 cut(s) 356, 387, 819
BtgZI GCGATG 1 cut(s) 529
BtsCI GGATG 3 cut(s) 118, 165, 515
BveI ACCTGC 1 cut(s) 569
Cac8I GCNNGC 2 cut(s) 19, 446
CciI TCATGA 1 cut(s) 6
CfoI GCGC 3 cut(s) 67, 192, 806
Cfr13I GGNCC 4 cut(s) 375, 493, 675, 818
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 514, 520
CviAII CATG 4 cut(s) 7, 253, 730, 815
CviQI GTAC 2 cut(s) 514, 520
DdeI CTNAG 1 cut(s) 140
DpnI GATC 9 cut(s) 92, 138, 151, 186, 200, 339, 381, 441, 750
DpnII GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 375, 493, 675
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 4 cut(s) 10, 256, 733, 818
FatI CATG 4 cut(s) 6, 252, 729, 814
FauI CCCGC 1 cut(s) 458
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 6 cut(s) 77, 222, 309, 312, 411, 657
FokI GGATG 3 cut(s) 125, 172, 522
Fsp4HI GCNGC 6 cut(s) 77, 222, 309, 312, 411, 657
FspBI CTAG 3 cut(s) 18, 315, 767
GlaI GCGC 3 cut(s) 66, 191, 805
GluI GCNGC 6 cut(s) 77, 222, 309, 312, 411, 657
GsaI CCCAGC 2 cut(s) 645, 670
GsuI CTGGAG 2 cut(s) 381, 644
HaeII RGCGCY 2 cut(s) 68, 807
HaeIII GGCC 3 cut(s) 356, 387, 819
HapII CCGG 2 cut(s) 597, 678
HgaI GACGC 1 cut(s) 181
HhaI GCGC 3 cut(s) 67, 192, 806
Hin1II CATG 4 cut(s) 10, 256, 733, 818
Hin6I GCGC 3 cut(s) 65, 190, 804
HinP1I GCGC 3 cut(s) 65, 190, 804
HinfI GANTC 2 cut(s) 163, 552
HpaII CCGG 2 cut(s) 597, 678
HphI GGTGA 4 cut(s) 377, 415, 470, 682
Hpy166II GTNNAC 3 cut(s) 250, 607, 742
Hpy188I TCNGA 5 cut(s) 141, 154, 292, 421, 564
Hpy188III TCNNGA 5 cut(s) 7, 147, 196, 335, 398
Hpy8I GTNNAC 3 cut(s) 250, 607, 742
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 350, 572, 659, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 441, 584, 752
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 4 cut(s) 10, 256, 733, 818
HspAI GCGC 3 cut(s) 65, 190, 804
Kzo9I GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
LmnI GCTCC 2 cut(s) 400, 770
Lsp1109I GCAGC 4 cut(s) 208, 320, 397, 643
LweI GCATC 2 cut(s) 559, 643
MaeI CTAG 3 cut(s) 18, 315, 767
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 618
MalI GATC 9 cut(s) 92, 138, 151, 186, 200, 339, 381, 441, 750
MboI GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
MboII GAAGA 1 cut(s) 449
MflI RGATCY 4 cut(s) 90, 149, 198, 748
MluCI AATT 3 cut(s) 31, 530, 774
MlyI GAGTC 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 2 cut(s) 597, 678
MspR9I CCNGG 2 cut(s) 384, 598
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 2 cut(s) 192, 611
MwoI GCNNNNNNNGC 4 cut(s) 73, 441, 584, 752
NciI CCSGG 1 cut(s) 598
NdeII GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 4 cut(s) 10, 256, 733, 818
PagI TCATGA 1 cut(s) 6
PctI GAATGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 596
PkrI GCNGC 6 cut(s) 78, 223, 310, 313, 412, 658
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 382
PspFI CCCAGC 2 cut(s) 641, 666
PspGI CCWGG 1 cut(s) 382
PspPI GGNCC 4 cut(s) 375, 493, 675, 818
PstI CTGCAG 1 cut(s) 661
PsuI RGATCY 4 cut(s) 90, 149, 198, 748
RsaI GTAC 2 cut(s) 515, 521
RsaNI GTAC 2 cut(s) 514, 520
SatI GCNGC 6 cut(s) 77, 222, 309, 312, 411, 657
Sau3AI GATC 9 cut(s) 90, 136, 149, 184, 198, 337, 379, 439, 748
Sau96I GGNCC 4 cut(s) 375, 493, 675, 818
SchI GAGTC 1 cut(s) 561
ScrFI CCNGG 2 cut(s) 384, 598
SfaNI GCATC 2 cut(s) 559, 643
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 3 cut(s) 375, 493, 675
Sse9I AATT 3 cut(s) 31, 530, 774
SsiI CCGC 5 cut(s) 77, 182, 311, 465, 812
SspMI CTAG 3 cut(s) 18, 315, 767
StyD4I CCNGG 2 cut(s) 382, 596
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 146, 336
TaqII GACCGA 1 cut(s) 392
TasI AATT 3 cut(s) 31, 530, 774
TauI GCSGC 2 cut(s) 79, 314
TfiI GAWTC 1 cut(s) 163
TseI GCWGC 4 cut(s) 221, 308, 410, 656
TspDTI ATGAA 3 cut(s) 176, 269, 708
VpaK11BI GGWCC 3 cut(s) 375, 493, 675
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 3 cut(s) 18, 315, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.