Rorug02G0583800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001391
Physical Location & Seq
Reverse (-)
70692043 .. 70695969
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0583800.1

Sequence Viewer

Length: 1041 bp
ATGGCCGCCGAGGAAGAAAATACGACGTCGTTCAAGAGTTTGGGGCTGTGTGATCAATTGGTGAAGGCTGTTGCTGAACAGCAATGGAAATCCCCTACCCCTATTCAAGCCGAAGTGATTCCTCATGCCCTCGAAGGAAAAGATTTGATAGCACTTTCCCAAACGGGTTCGGGTAAAACCGGAGCCTTTGCCCTTCCAATATTGCAAGCTCTATTCGATTCTCCCCAACCCTTTTTTGCTCTGGTTCTGTCCCCGACAAGGGAGCTTGCACTTCAGATTGATCAGCAGTTCCAAGCTCTTGGGCCTGGAATTGGCGCCAAGTCTGTAGCGCTTGTTGGAGGAGAGAGTGAGGTGCAACAATCTACTGTTCTTGCAAAGCAGCCGCATATTATTGTTGCAACACCTGGACGCCTTCTTCATCATCTAACCAAGACAAGGGGATTCTCTCTAGGCACAATTAAATATTTGGTTTTAGATGAGGCAGACAGGTTGCTTGGTGAGGAGTTTGAGAAAACAACAAATGAAATTCTAAAGGTCATTCCTCATGGTGGTGAACGGAGAACATATTTATTTTCCGCTACTATGACCAACAAGGTCAAGAAGGTGGCAAGGGCTGGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCTAAGTATTCTACTGTTGAAACCCTACAGCAGCAAATGATGAGTACACCAGTGCAGTACAAGGGATGTTATCTCGTATGTCTTCTTAAGAAGTGGCAACGCACTGACCAAAAAAAGAAGAAGTGCCAACGCAGAGCAATGGTGTTTGCTGAAAAATGCGCAGAAACACCCTTTTTGGCTTGTATGCTTCAAAATCTTGGAATCAAGGCCATCCCCCTTCATGGTAAAATGAGCCAGTCGGAAAGAGTTGGAGCCTTAAATGTGTTCAAAGCTGGACAGAATAACGTACTTGTTTGCACTAATTTGCCAAGTAGAGGATTGGATATCCCATCAGTGGATATGGTTATCAATTATAATATGCCCGAGAATCCTAAGGTTAGGCTTGCTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.01

Weight (kDa)

9.34

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 33 - 201 1.3e-45 DEAD/DEAH box helicase
ResIII PF04851 46 - 181 1e-07 Type III restriction enzyme, res subunit
Helicase_C PF00271 255 - 341 3.6e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1002
AatII GACGTC 1 cut(s) 29
Acc16I TGCGCA 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 3 cut(s) 6, 383, 576
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 3 cut(s) 26, 315, 409
AfaI GTAC 3 cut(s) 694, 707, 936
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 8 cut(s) 258, 259, 311, 435, 548, 869, 962, 982
AflII CTTAAG 1 cut(s) 734
AgsI TTSAA 6 cut(s) 34, 107, 641, 668, 839, 916
AjnI CCWGG 2 cut(s) 304, 403
AluBI AGCT 4 cut(s) 209, 265, 296, 920
AluI AGCT 4 cut(s) 209, 265, 296, 920
Ama87I CYCGRG 1 cut(s) 1010
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 3 cut(s) 3, 302, 855
ApeKI GCWGC 2 cut(s) 379, 679
ApoI RAATTY 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 3 cut(s) 317, 331, 809
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 3 cut(s) 73, 509, 563
AvaI CYCGRG 1 cut(s) 1010
AxyI CCTNAGG 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 391, 691
BccI CCATC 2 cut(s) 866, 985
BciT130I CCWGG 2 cut(s) 306, 405
BclI TGATCA 2 cut(s) 52, 280
BfaI CTAG 2 cut(s) 449, 1039
BfmI CTRYAG 2 cut(s) 324, 674
BfoI RGCGCY 2 cut(s) 318, 332
BfrI CTTAAG 1 cut(s) 734
BisI GCNGC 4 cut(s) 6, 380, 383, 680
BlsI GCNGC 4 cut(s) 7, 381, 384, 681
Bme1390I CCNGG 2 cut(s) 306, 405
BmeT110I CYCGRG 1 cut(s) 1010
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 4 cut(s) 184, 316, 626, 901
BmrFI CCNGG 2 cut(s) 306, 405
BmsI GCATC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 722
BsaHI GRCGYC 3 cut(s) 26, 315, 409
BsaJI CCNNGG 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 8 cut(s) 258, 259, 311, 435, 548, 869, 962, 982
Bse1I ACTGG 2 cut(s) 698, 883
Bse21I CCTNAGG 1 cut(s) 1020
Bse3DI GCAATG 2 cut(s) 89, 792
BseBI CCWGG 2 cut(s) 306, 405
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 719, 858
BseLI CCNNNNNNNGG 8 cut(s) 258, 259, 311, 435, 548, 869, 962, 982
BseMI GCAATG 2 cut(s) 89, 792
BseNI ACTGG 2 cut(s) 698, 883
BseRI GAGGAG 2 cut(s) 354, 515
BseXI GCAGC 2 cut(s) 391, 691
BsgI GTGCAG 1 cut(s) 722
BshFI GGCC 3 cut(s) 5, 304, 857
BshNI GGYRCC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 8 cut(s) 258, 259, 311, 435, 548, 869, 962, 982
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 3 cut(s) 5, 304, 857
BsoBI CYCGRG 1 cut(s) 1010
Bsp143I GATC 2 cut(s) 52, 280
BspACI CCGC 3 cut(s) 6, 383, 576
BspANI GGCC 3 cut(s) 5, 304, 857
BspLI GGNNCC 4 cut(s) 184, 316, 626, 901
BspT107I GGYRCC 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 89, 792
BsrI ACTGG 2 cut(s) 698, 883
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 52, 280
BssNI GRCGYC 3 cut(s) 26, 315, 409
Bst2UI CCWGG 2 cut(s) 306, 405
Bst4CI ACNGT 2 cut(s) 367, 664
BstACI GRCGYC 3 cut(s) 26, 315, 409
BstAFI CTTAAG 1 cut(s) 734
BstC8I GCNNGC 3 cut(s) 207, 267, 1032
BstDEI CTNAG 3 cut(s) 620, 651, 1020
BstF5I GGATG 2 cut(s) 719, 858
BstH2I RGCGCY 2 cut(s) 318, 332
BstHHI GCGC 3 cut(s) 317, 331, 809
BstKTI GATC 2 cut(s) 55, 283
BstMBI GATC 2 cut(s) 52, 280
BstNI CCWGG 2 cut(s) 306, 405
BstSCI CCNGG 2 cut(s) 304, 403
BstSFI CTRYAG 2 cut(s) 324, 674
BstV1I GCAGC 2 cut(s) 391, 691
BstV2I GAAGAC 1 cut(s) 722
BstXI CCANNNNNNTGG 1 cut(s) 299
Bsu36I CCTNAGG 1 cut(s) 1020
BsuRI GGCC 3 cut(s) 5, 304, 857
BtsCI GGATG 2 cut(s) 719, 858
BtsIMutI CAGTG 3 cut(s) 705, 750, 987
Cac8I GCNNGC 3 cut(s) 207, 267, 1032
CfoI GCGC 3 cut(s) 317, 331, 809
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 417
Csp6I GTAC 3 cut(s) 693, 706, 935
CviAII CATG 3 cut(s) 125, 545, 869
CviQI GTAC 3 cut(s) 693, 706, 935
DdeI CTNAG 3 cut(s) 620, 651, 1020
DinI GGCGCC 1 cut(s) 316
DpnI GATC 2 cut(s) 54, 282
DpnII GATC 2 cut(s) 52, 280
EaeI YGGCCR 1 cut(s) 3
Eco32I GATATC 1 cut(s) 973
Eco47III AGCGCT 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 1020
Eco88I CYCGRG 1 cut(s) 1010
EcoRII CCWGG 2 cut(s) 304, 403
EcoRV GATATC 1 cut(s) 973
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
FaeI CATG 3 cut(s) 128, 548, 872
FaqI GGGAC 1 cut(s) 235
FatI CATG 3 cut(s) 124, 544, 868
FbaI TGATCA 2 cut(s) 52, 280
Fnu4HI GCNGC 4 cut(s) 6, 380, 383, 680
FokI GGATG 2 cut(s) 726, 845
Fsp4HI GCNGC 4 cut(s) 6, 380, 383, 680
FspBI CTAG 2 cut(s) 449, 1039
FspI TGCGCA 1 cut(s) 808
GlaI GCGC 3 cut(s) 316, 330, 808
GluI GCNGC 4 cut(s) 6, 380, 383, 680
HaeII RGCGCY 2 cut(s) 318, 332
HaeIII GGCC 3 cut(s) 5, 304, 857
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 417
HhaI GCGC 3 cut(s) 317, 331, 809
Hin1I GRCGYC 3 cut(s) 26, 315, 409
Hin1II CATG 3 cut(s) 128, 548, 872
Hin6I GCGC 3 cut(s) 315, 329, 807
HinP1I GCGC 3 cut(s) 315, 329, 807
HinfI GANTC 5 cut(s) 118, 218, 441, 849, 1015
HpaII CCGG 1 cut(s) 180
HphI GGTGA 3 cut(s) 73, 509, 563
Hpy166II GTNNAC 2 cut(s) 554, 695
Hpy188I TCNGA 2 cut(s) 276, 889
Hpy188III TCNNGA 2 cut(s) 34, 598
Hpy8I GTNNAC 2 cut(s) 554, 695
Hpy99I CGWCG 2 cut(s) 28, 31
HpyAV CCTTC 6 cut(s) 58, 128, 203, 422, 595, 875
HpyCH4III ACNGT 2 cut(s) 367, 664
HpyCH4IV ACGT 2 cut(s) 26, 933
HpyCH4V TGCA 7 cut(s) 205, 269, 355, 374, 398, 703, 945
HpyF3I CTNAG 3 cut(s) 620, 651, 1020
HpySE526I ACGT 2 cut(s) 26, 933
Hsp92I GRCGYC 3 cut(s) 26, 315, 409
Hsp92II CATG 3 cut(s) 128, 548, 872
HspAI GCGC 3 cut(s) 315, 329, 807
KasI GGCGCC 1 cut(s) 314
Ksp22I TGATCA 2 cut(s) 52, 280
Kzo9I GATC 2 cut(s) 52, 280
LmnI GCTCC 3 cut(s) 182, 262, 899
Lsp1109I GCAGC 2 cut(s) 391, 691
LweI GCATC 1 cut(s) 656
MaeI CTAG 2 cut(s) 449, 1039
MaeII ACGT 2 cut(s) 26, 933
MalI GATC 2 cut(s) 54, 282
MboI GATC 2 cut(s) 52, 280
MboII GAAGA 5 cut(s) 26, 407, 646, 722, 778
MfeI CAATTG 1 cut(s) 56
MluCI AATT 6 cut(s) 56, 309, 456, 525, 949, 997
Mly113I GGCGCC 1 cut(s) 315
MmeI TCCRAC 3 cut(s) 316, 867, 877
MnlI CCTC 9 cut(s) 4, 132, 140, 332, 343, 472, 493, 552, 956
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 3 cut(s) 459, 735, 905
MslI CAYNNNNRTG 1 cut(s) 549
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 306, 405
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 2 cut(s) 306, 405
NarI GGCGCC 1 cut(s) 315
NdeII GATC 2 cut(s) 52, 280
NlaIII CATG 3 cut(s) 128, 548, 872
NlaIV GGNNCC 4 cut(s) 184, 316, 626, 901
NmeAIII GCCGAG 1 cut(s) 34
NsbI TGCGCA 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 5 cut(s) 118, 218, 441, 849, 1015
PkrI GCNGC 4 cut(s) 7, 381, 384, 681
PluTI GGCGCC 1 cut(s) 318
PsiI TTATAA 1 cut(s) 1002
Psp6I CCWGG 2 cut(s) 304, 403
PspGI CCWGG 2 cut(s) 304, 403
PspN4I GGNNCC 4 cut(s) 184, 316, 626, 901
PspPI GGNCC 1 cut(s) 302
RsaI GTAC 3 cut(s) 694, 707, 936
RsaNI GTAC 3 cut(s) 693, 706, 935
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 3 cut(s) 459, 735, 905
SatI GCNGC 4 cut(s) 6, 380, 383, 680
Sau3AI GATC 2 cut(s) 52, 280
Sau96I GGNCC 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 306, 405
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 2 cut(s) 324, 674
SfoI GGCGCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 6 cut(s) 56, 309, 456, 525, 949, 997
SsiI CCGC 3 cut(s) 6, 383, 576
SspDI GGCGCC 1 cut(s) 314
SspI AATATT 2 cut(s) 201, 464
SspMI CTAG 2 cut(s) 449, 1039
StyD4I CCNGG 2 cut(s) 304, 403
TaaI ACNGT 2 cut(s) 367, 664
TaiI ACGT 2 cut(s) 29, 936
TaqI TCGA 2 cut(s) 132, 216
TasI AATT 6 cut(s) 56, 309, 456, 525, 949, 997
TatI WGTACW 2 cut(s) 692, 705
TauI GCSGC 2 cut(s) 8, 385
TfiI GAWTC 5 cut(s) 118, 218, 441, 849, 1015
Tru1I TTAA 3 cut(s) 459, 735, 905
Tru9I TTAA 3 cut(s) 459, 735, 905
TscAI CASTG 3 cut(s) 705, 757, 987
TseI GCWGC 2 cut(s) 379, 679
TspDTI ATGAA 3 cut(s) 407, 537, 857
TspGWI ACGGA 1 cut(s) 571
TspRI CASTG 3 cut(s) 705, 757, 987
Vha464I CTTAAG 1 cut(s) 734
XapI RAATTY 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 2 cut(s) 449, 1039
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.