FvH4_3g23891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001391
Physical Location & Seq
Reverse (-)
16997281 .. 16998370
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23891.t1

Sequence Viewer

Length: 420 bp
ATGGCTTCCCGTACTAACATGCAATGTCTACTGAAAATTGACACACATTCCGGTGGATGGGAAAAGTGCCTGAGCAAGATGCTGAAAAAGATCAGAGGAGCAAAGTATTCTTTAGATGTCCAAGAAGGAACACTCCTGGTTGCTGGGAAAGTAGACCCGACGAAAGTACTGAACAAGCTGAAGAAGGCTGGGAAAGCAGCAGAGATTTTGTGGGTGTCTACTGGAGCAGCTGAGATCGTCTATTTTGAAGATCCCAACTTGTACAGTAATCACTATAGTCCTTATAATAGTGATTACAGTTATACGAGTAATGGTTACGGACCTGGATACTATCCTTCTTCTTCATACGGCCATCATCATCAGCTTCCTAATCCCCATCACTATCTCTATGGCGGCCATGGTTACGCTGGATTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.52

Weight (kDa)

8.93

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AccI GTMKAC 3 cut(s) 28, 153, 218
AciI CCGC 1 cut(s) 393
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 2 cut(s) 349, 394
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 3 cut(s) 13, 168, 263
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 248
AjnI CCWGG 2 cut(s) 135, 322
AluBI AGCT 3 cut(s) 178, 230, 364
AluI AGCT 3 cut(s) 178, 230, 364
AlwI GGATC 1 cut(s) 245
AoxI GGCC 2 cut(s) 349, 394
ApeKI GCWGC 2 cut(s) 197, 227
AspS9I GGNCC 1 cut(s) 320
AvaII GGWCC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 209, 239
BccI CCATC 3 cut(s) 51, 360, 384
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 137, 324
BciVI GTATCC 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 274
BfuI GTATCC 1 cut(s) 320
BisI GCNGC 3 cut(s) 198, 228, 394
BlsI GCNGC 3 cut(s) 199, 229, 395
BmcAI AGTACT 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 137, 324
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmrFI CCNGG 2 cut(s) 137, 324
BmsI GCATC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 29
BseBI CCWGG 2 cut(s) 137, 324
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 62, 222
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 209, 239
BseYI CCCAGC 2 cut(s) 143, 188
BshFI GGCC 2 cut(s) 351, 396
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 57
BsnI GGCC 2 cut(s) 351, 396
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 3 cut(s) 90, 234, 250
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 1 cut(s) 393
BspANI GGCC 2 cut(s) 351, 396
BspCNI CTCAG 2 cut(s) 63, 223
BspPI GGATC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 261
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 3 cut(s) 90, 234, 250
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 2 cut(s) 137, 324
Bst4CI ACNGT 2 cut(s) 266, 299
BstAUI TGTACA 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 71, 231
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 3 cut(s) 93, 237, 253
BstMBI GATC 3 cut(s) 90, 234, 250
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 2 cut(s) 137, 324
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 135, 322
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 209, 239
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuI GTATCC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 351, 396
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 3 cut(s) 12, 167, 262
CviAII CATG 2 cut(s) 19, 398
CviJI RGCY 7 cut(s) 5, 178, 188, 230, 351, 364, 396
CviKI_1 RGCY 7 cut(s) 5, 178, 188, 230, 351, 364, 396
CviQI GTAC 3 cut(s) 12, 167, 262
DdeI CTNAG 2 cut(s) 71, 231
DpnI GATC 3 cut(s) 92, 236, 252
DpnII GATC 3 cut(s) 90, 234, 250
EaeI YGGCCR 2 cut(s) 349, 394
Eco130I CCWWGG 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 135, 322
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 2 cut(s) 22, 401
FaiI YATR 7 cut(s) 20, 276, 285, 303, 346, 390, 399
FatI CATG 2 cut(s) 18, 397
FblI GTMKAC 3 cut(s) 28, 153, 218
Fnu4HI GCNGC 3 cut(s) 198, 228, 394
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 198, 228, 394
GluI GCNGC 3 cut(s) 198, 228, 394
GsaI CCCAGC 2 cut(s) 147, 192
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 2 cut(s) 351, 396
HapII CCGG 1 cut(s) 51
Hin1II CATG 2 cut(s) 22, 401
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 3 cut(s) 29, 154, 219
Hpy188I TCNGA 1 cut(s) 95
Hpy8I GTNNAC 3 cut(s) 29, 154, 219
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 119, 178, 345
HpyCH4III ACNGT 2 cut(s) 266, 299
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 71, 231
Hsp92II CATG 2 cut(s) 22, 401
Kzo9I GATC 3 cut(s) 90, 234, 250
LmnI GCTCC 2 cut(s) 98, 224
Lsp1109I GCAGC 2 cut(s) 209, 239
LweI GCATC 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 314, 401
MalI GATC 3 cut(s) 92, 236, 252
MboI GATC 3 cut(s) 90, 234, 250
MboII GAAGA 4 cut(s) 193, 260, 330, 333
MflI RGATCY 1 cut(s) 250
MluCI AATT 1 cut(s) 36
MnlI CCTC 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 137, 324
MvaI CCWGG 2 cut(s) 137, 324
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 1 cut(s) 397
NdeII GATC 3 cut(s) 90, 234, 250
NlaIII CATG 2 cut(s) 22, 401
NspI RCATGY 1 cut(s) 22
PkrI GCNGC 3 cut(s) 199, 229, 395
PsiI TTATAA 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 135, 322
PspFI CCCAGC 2 cut(s) 143, 188
PspGI CCWGG 2 cut(s) 135, 322
PspPI GGNCC 1 cut(s) 320
PsuI RGATCY 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 3 cut(s) 13, 168, 263
RsaNI GTAC 3 cut(s) 12, 167, 262
RseI CAYNNNNRTG 1 cut(s) 51
SatI GCNGC 3 cut(s) 198, 228, 394
Sau3AI GATC 3 cut(s) 90, 234, 250
Sau96I GGNCC 1 cut(s) 320
ScaI AGTACT 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 137, 324
SetI ASST 4 cut(s) 180, 232, 325, 366
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 135, 322
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 266, 299
TasI AATT 1 cut(s) 36
TatI WGTACW 2 cut(s) 166, 261
TauI GCSGC 1 cut(s) 396
TseI GCWGC 2 cut(s) 197, 227
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 320
XceI RCATGY 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XmiI GTMKAC 3 cut(s) 28, 153, 218
ZrmI AGTACT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.