Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

19179266 .. 19181189

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCCTAATTGACATACACTCCTCTCCTGCTTCTCTCGATGAGATCAAACCATGGAAGATCAACATGCATATAGTTAGAACTTGGAAGGGAAATGACAAAGAATCAGGCAACTCCATCGACATGGTTTTACTCGATTCATCGGGGACAAAAATCCACACAACTATAGATGAAGCTTTTACCAAATGGATTACGAATATTGGTGGCGAAAACATCAACAAGCCAAATGATGGAGAAACTAAAATCGATATTCATGAAGATTTGTTGATAACTGAGTGCAAAGATCCTATTAAAACTATAGTGGATGAAGTTTATGGAGAATCTTTTACAGAGTCCTATAATCCTGATTTTTACCAAGAGAGGGCTATTTTGTGTCATACAAATGACGTTGCGGATGAGATTAATGATTATATGCTTTCACAATTACAAGGTGAAGAGACAAAATGTTACGGCGCTGACACCATTTATCCAACGCATGCAAGCCCAAATGACAAAATGTTATACCCTCTAGAATTTTTGAATAGCATCAAAATCCCGGGCTTTCCTGATTTTAAGTTGAGATTAAAGGTTGGTGCTCCTGTCATGTTACTTAGGGATCTTGCTCCTTATGGTTGGTTACGTAAGGGGACACGACTTCAAATTACTCGGGTTGAAACTTTTGTGCTTGAGGCTATGATTATAACAGGTAATAATCATGGTGAGAAAGTCTTGATCCCTAGGATACCCTCAGACCTTAGGGAAGCAAAATTTCCTATCAAAATGCGGCGTAGGCAGTTTCCTGTGAAACTTGCATTCGCCATGACTATAGATGAAAGTCAAAGGCAAACACTTTCCAAAGTTGGTATATATCTACCAAGACAATTGTTATTTCATGGACAAAGGTATGTTGCGATATCCAAAGTGAAGTCAAGAGCTGGTTTGAAAGTTCTTATCACAGATAAAGATGGGAAACCTGATCAAGAAGAAACCAAGAATGTTGTGTTCAAGGAGTTGTTTACAGAACATTTGTCAGAACCATTAGTCAACATGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_Helicase PIF1

Protein Analysis

344

Amino Acids

39.25

Weight (kDa)

6.03

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF223	PF02721	16 - 66	2.6e-07	Domain of unknown function DUF223
Pif1_2B_dom	PF21530	171 - 216	2.2e-13	DNA helicase Pif1, 2B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	2 cut(s)	392, 763
AclWI	GGATC	3 cut(s)	278, 603, 706
AcsI	RAATTY	2 cut(s)	512, 746
AfiI	CCNNNNNNNGG	2 cut(s)	230, 361
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	5 cut(s)	520, 638, 653, 922, 985
AluBI	AGCT	2 cut(s)	176, 914
AluI	AGCT	2 cut(s)	176, 914
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	3 cut(s)	278, 603, 706
Ama87I	CYCGRG	2 cut(s)	535, 645
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	512, 746
AseI	ATTAAT	1 cut(s)	402
AspA2I	CCTAGG	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	536, 537
AsuHPI	GGTGA	2 cut(s)	443, 710
AvaI	CYCGRG	2 cut(s)	535, 645
AvrII	CCTAGG	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	577
BccI	CCATC	3 cut(s)	125, 224, 938
BceAI	ACGGC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciVI	GTATCC	1 cut(s)	714
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	2 cut(s)	536, 537
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	509, 717
BfmI	CTRYAG	3 cut(s)	165, 297, 804
BfoI	RGCGCY	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	714
BisI	GCNGC	1 cut(s)	764
BlnI	CCTAGG	1 cut(s)	716
BlsI	GCNGC	1 cut(s)	765
Bme1390I	CCNGG	2 cut(s)	536, 537
BmeT110I	CYCGRG	2 cut(s)	535, 645
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	536, 537
BmsI	GCATC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	2 cut(s)	536, 537
Bsa29I	ATCGAT	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	620
BsaJI	CCNNGG	3 cut(s)	53, 535, 716
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 361
Bse21I	CCTNAGG	1 cut(s)	734
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	53, 535, 716
BseGI	GGATG	2 cut(s)	310, 400
BseLI	CCNNNNNNNGG	2 cut(s)	230, 361
BseMII	CTCAG	2 cut(s)	264, 741
BseRI	GAGGAG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	2 cut(s)	535, 645
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	160, 640
BslI	CCNNNNNNNGG	2 cut(s)	230, 361
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	2 cut(s)	160, 640
BsmI	GAATGC	1 cut(s)	791
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	535, 645
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	2 cut(s)	392, 763
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	265, 740
BspDI	ATCGAT	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	253
BspPI	GGATC	3 cut(s)	278, 603, 706
BssECI	CCNNGG	3 cut(s)	53, 535, 716
BssMI	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
BssT1I	CCWWGG	2 cut(s)	53, 716
Bst6I	CTCTTC	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	477, 481
BstDEI	CTNAG	4 cut(s)	273, 590, 727, 734
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	310, 400
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	6 cut(s)	48, 63, 286, 598, 714, 958
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
BstMWI	GCNNNNNNNGC	1 cut(s)	769
BstNSI	RCATGY	3 cut(s)	70, 479, 1030
BstSCI	CCNGG	2 cut(s)	534, 535
BstSFI	CTRYAG	3 cut(s)	165, 297, 804
BstSNI	TACGTA	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	283, 595
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	2 cut(s)	283, 595
Bsu15I	ATCGAT	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	734
BsuI	GTATCC	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	310, 400
Cac8I	GCNNGC	2 cut(s)	477, 481
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	4
Cfr9I	CCCGGG	1 cut(s)	535
ClaI	ATCGAT	1 cut(s)	246
CviJI	RGCY	8 cut(s)	5, 176, 223, 365, 483, 540, 671, 914
CviKI_1	RGCY	8 cut(s)	5, 176, 223, 365, 483, 540, 671, 914
DdeI	CTNAG	4 cut(s)	273, 590, 727, 734
DpnI	GATC	6 cut(s)	47, 62, 285, 597, 713, 957
DpnII	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco105I	TACGTA	1 cut(s)	620
Eco130I	CCWWGG	2 cut(s)	53, 716
Eco32I	GATATC	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	734
Eco88I	CYCGRG	2 cut(s)	535, 645
EcoRV	GATATC	1 cut(s)	894
EcoT14I	CCWWGG	2 cut(s)	53, 716
EcoT22I	ATGCAT	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	53, 716
FaqI	GGGAC	2 cut(s)	160, 640
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	1 cut(s)	764
FokI	GGATG	2 cut(s)	317, 407
Fsp4HI	GCNGC	1 cut(s)	764
FspBI	CTAG	2 cut(s)	509, 717
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	1 cut(s)	455
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	4 cut(s)	104, 137, 320, 332
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	443, 710
Hpy166II	GTNNAC	2 cut(s)	996, 1024
Hpy188I	TCNGA	2 cut(s)	730, 1012
Hpy188III	TCNNGA	8 cut(s)	38, 254, 344, 509, 545, 709, 909, 959
Hpy8I	GTNNAC	2 cut(s)	996, 1024
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	387, 619
HpyCH4V	TGCA	4 cut(s)	70, 279, 479, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	769
HpyF3I	CTNAG	4 cut(s)	273, 590, 727, 734
HpySE526I	ACGT	2 cut(s)	387, 619
HspAI	GCGC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
LmnI	GCTCC	2 cut(s)	580, 607
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	509, 717
MaeII	ACGT	2 cut(s)	387, 619
MaeIII	GTNAC	3 cut(s)	446, 585, 615
MalI	GATC	6 cut(s)	47, 62, 285, 597, 713, 957
MboI	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
MboII	GAAGA	4 cut(s)	70, 269, 446, 974
MfeI	CAATTG	1 cut(s)	860
MflI	RGATCY	2 cut(s)	283, 595
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	6 cut(s)	9, 422, 512, 639, 746, 860
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	5 cut(s)	34, 354, 516, 661, 736
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	4 cut(s)	291, 402, 552, 563
MslI	CAYNNNNRTG	2 cut(s)	122, 381
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	2 cut(s)	536, 537
MunI	CAATTG	1 cut(s)	860
Mva1269I	GAATGC	1 cut(s)	791
MwoI	GCNNNNNNNGC	1 cut(s)	769
NciI	CCSGG	2 cut(s)	536, 537
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	3 cut(s)	70, 479, 1030
PaeI	GCATGC	1 cut(s)	479
PagI	TCATGA	1 cut(s)	253
PciI	ACATGT	1 cut(s)	1026
PctI	GAATGC	1 cut(s)	791
PfeI	GAWTC	3 cut(s)	104, 137, 320
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	765
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	620
PscI	ACATGT	1 cut(s)	1026
PshBI	ATTAAT	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	680
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	283, 595
RseI	CAYNNNNRTG	2 cut(s)	122, 381
SaqAI	TTAA	4 cut(s)	291, 402, 552, 563
SatI	GCNGC	1 cut(s)	764
Sau3AI	GATC	6 cut(s)	45, 60, 283, 595, 711, 955
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	536, 537
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	3 cut(s)	165, 297, 804
SmaI	CCCGGG	1 cut(s)	537
SmiMI	CAYNNNNRTG	2 cut(s)	122, 381
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SnaBI	TACGTA	1 cut(s)	620
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	6 cut(s)	9, 422, 512, 639, 746, 860
SsiI	CCGC	2 cut(s)	392, 763
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	509, 717
StyD4I	CCNGG	2 cut(s)	534, 535
StyI	CCWWGG	2 cut(s)	53, 716
TaiI	ACGT	2 cut(s)	390, 622
TaqI	TCGA	4 cut(s)	39, 120, 135, 246
TasI	AATT	6 cut(s)	9, 422, 512, 639, 746, 860
TauI	GCSGC	1 cut(s)	766
TfiI	GAWTC	3 cut(s)	104, 137, 320
Tru1I	TTAA	4 cut(s)	291, 402, 552, 563
Tru9I	TTAA	4 cut(s)	291, 402, 552, 563
TspDTI	ATGAA	7 cut(s)	129, 186, 242, 270, 321, 825, 860
TspMI	CCCGGG	1 cut(s)	535
Van91I	CCANNNNNTGG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	2 cut(s)	512, 746
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	3 cut(s)	70, 479, 1030
XmaI	CCCGGG	1 cut(s)	535
XmaJI	CCTAGG	1 cut(s)	716
XspI	CTAG	2 cut(s)	509, 717
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.