Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Forward (+)

2444188 .. 2446000

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGTTTTCATTTACTTCTATGGGAGCAAAAGTTGATAACTCAATTAATGACGGATCAAGTCCTTACATTTTTAAAATTAGTGGTCAAGTTTGTCATTTAATGGGATCTCTTTTACCTGTTGGCAATGAGTCTCCAAAATTTGCTCAATTATATGTTTATGATACATATAATGAAGTTCAAAATCGTCTCAAAGCTTTTAATTTTGATGGAAAAAATGGAAGGCTTGACGAAAGAATTGTTCAAGAATTGATTAAAATGTTTGATGAATTGAATGAGTTAGTCAAACTTTTTCGAACAGCAAGAGATAAATTTAAAACAAATGGTCTTATGAATTTAAGAATGACTTTATTAGGTAGGCAACCAAATGATGGGAAACAATATGATGAACCAACAAGTGATGAGATAGGTGGTTTAATAGTTGGTGATATAGGTTTGTCTGACTCTAATAGAGACATCATTATAGAATGTAAAAGCGAGGGATTAAAGCGTGTTACAAAATTGAATCTAAAATTTATGGCCCTTCAATATCCTATTCTTTTTCCGTATGGTGAAGACGGGTATAGGCCGGATTTAAAGTGGAATCAAAATTATAAAAGGCCAAAAACAAAAAGACAAAGAGTGCCTATGAGAGCTTATATAGCTTATCAAATTCAGGAAAGAGAACCATGTTTAACTACGTTGTTAAAAGGAGGTAGACTTTTTCAACAATATTTGGTTGATTCGTATGCAACAGTTGAGGAGGACAGGTTAGATTACATTAGACAAAATCAAAAAAATTTGAGGAGTGAAATTTACAAGGGGATTTATGATGCAATATCAAGAGGTGATAATGATGCAAACAATTTAGAACAAAAAATTGTGTTGCCTGCTTCGTATACAGGAAGTCCTAGATATATGATCAATAATTATCAAGATGCTATGGCTATTTGTAGAGAGTATGGTCATCCTGATTTGTTTATAACATTTACCTGTAATGTAAAATGGCCAGAAATTATAAGAGAGTTTGAAAAAAAACAGGGTTACAAACCTGAAGATAGACCTGATATAATTTCTAGAATATTTAAAATGAAGCTTGATGATCTGCTTGATTTCATCAAATCTGGACAGCCTTTTGGAGAGGTTGATGCAAGTAAGTTCTACAATGAATTTCAAAAAAGAGGTTTGCCTCATTCTCATATGTTAATATGGTTGAGACCAAAATTTAAATGCTACACAGCATCAGATATAGATTCTATCATTTCAGCTGAGTTACCAGACAAATTTATGAACCTTCGGCTTTATGAAATTGTTAATCAATTTATGATTCATGGTCCACGTGGTTATATCAATTGGAATTCTTCTTGCATGCGAGAAAATAAATGCACCAAAAATTTTCCCAAGGCGTATAAAAATGAGACGGTTTTTGACCCGAGTGGCTTTCCTGTTTATAGGCGTCGTGATGATGAGACAAAATTTGTAGTAAAAAATGGAATTAAAGTTGATAATAGTTTTGTTGTTCCTTATAATTCTGAATTGCTTTTGAGATATAATGCTCATATAAATGTTGAATTATGTTGTCAATCAACACTTATAAAATATTTGTTCAAATATGTAAATAAAGGTTCAGATAGAGCACGGTTGGTTCTTCAGCAAAATCCAAATGATGAAATATTAACATATCTAAATTGTAGATATATATCACCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N

Protein Analysis

563

Amino Acids

65.65

Weight (kDa)

8.87

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	591, 959, 995, 1503, 1571
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccI	GTMKAC	2 cut(s)	694, 875
AclWI	GGATC	2 cut(s)	61, 112
AcoI	YGGCCR	1 cut(s)	983
AcuI	CTGAAG	2 cut(s)	1050, 1610
AcvI	CACGTG	1 cut(s)	1316
AcyI	GRCGYC	1 cut(s)	1432
AfiI	CCNNNNNNNGG	1 cut(s)	368
AluBI	AGCT	5 cut(s)	194, 632, 641, 1072, 1244
AluI	AGCT	5 cut(s)	194, 632, 641, 1072, 1244
Alw21I	GWGCWC	1 cut(s)	1615
Alw26I	GTCTC	6 cut(s)	135, 191, 444, 1186, 1388, 1439
AlwI	GGATC	2 cut(s)	61, 112
Ama87I	CYCGRG	1 cut(s)	1408
AoxI	GGCC	4 cut(s)	516, 563, 596, 983
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	517, 1310
AsuHPI	GGTGA	4 cut(s)	434, 560, 836, 1671
AsuII	TTCGAA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	1408
AvaII	GGWCC	1 cut(s)	1310
BalI	TGGCCA	1 cut(s)	985
BbrPI	CACGTG	1 cut(s)	1316
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	1615
BccI	CCATC	2 cut(s)	200, 362
BclI	TGATCA	1 cut(s)	897
BcoDI	GTCTC	6 cut(s)	135, 191, 444, 1186, 1388, 1439
BfaI	CTAG	2 cut(s)	888, 1053
Bme18I	GGWCC	1 cut(s)	1310
BmeT110I	CYCGRG	1 cut(s)	1408
BmgT120I	GGNCC	2 cut(s)	517, 1310
BmsI	GCATC	5 cut(s)	799, 823, 904, 1114, 1226
BpiI	GAAGAC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	1316
BsaBI	GATNNNNATC	1 cut(s)	1675
BsaHI	GRCGYC	1 cut(s)	1432
BsaI	GGTCTC	1 cut(s)	1186
BsaJI	CCNNGG	1 cut(s)	1377
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 731, 761
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	1675
BseDI	CCNNGG	1 cut(s)	1377
BseGI	GGATG	1 cut(s)	943
BseJI	GATNNNNATC	1 cut(s)	1675
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	1236
BseRI	GAGGAG	2 cut(s)	752, 796
BshFI	GGCC	4 cut(s)	518, 565, 598, 985
BsiHKAI	GWGCWC	1 cut(s)	1615
BsiHKCI	CYCGRG	1 cut(s)	1408
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	6 cut(s)	135, 191, 444, 1186, 1388, 1439
BsmBI	CGTCTC	2 cut(s)	191, 1388
BsnI	GGCC	4 cut(s)	518, 565, 598, 985
Bso31I	GGTCTC	1 cut(s)	1186
BsoBI	CYCGRG	1 cut(s)	1408
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	1615
Bsp143I	GATC	4 cut(s)	53, 104, 897, 1078
BspANI	GGCC	4 cut(s)	518, 565, 598, 985
BspCNI	CTCAG	1 cut(s)	1237
BspPI	GGATC	2 cut(s)	61, 112
BspT104I	TTCGAA	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	1186
BsrDI	GCAATG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	1377
BssMI	GATC	4 cut(s)	53, 104, 897, 1078
BssNAI	GTATAC	1 cut(s)	876
BssNI	GRCGYC	1 cut(s)	1432
BssT1I	CCWWGG	1 cut(s)	1377
Bst1107I	GTATAC	1 cut(s)	876
Bst4CI	ACNGT	3 cut(s)	733, 1399, 1617
BstACI	GRCGYC	1 cut(s)	1432
BstBAI	YACGTR	1 cut(s)	1316
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	867, 1346
BstDEI	CTNAG	1 cut(s)	1245
BstF5I	GGATG	1 cut(s)	943
BstKTI	GATC	4 cut(s)	56, 107, 900, 1081
BstMAI	GTCTC	6 cut(s)	135, 191, 444, 1186, 1388, 1439
BstMBI	GATC	4 cut(s)	53, 104, 897, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNSI	RCATGY	1 cut(s)	1348
BstV2I	GAAGAC	1 cut(s)	558
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	876
BsuRI	GGCC	4 cut(s)	518, 565, 598, 985
BtsCI	GGATG	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	867, 1346
Cfr13I	GGNCC	2 cut(s)	517, 1310
CseI	GACGC	1 cut(s)	1421
CviAII	CATG	3 cut(s)	666, 1307, 1345
DdeI	CTNAG	1 cut(s)	1245
DpnI	GATC	4 cut(s)	55, 106, 899, 1080
DpnII	GATC	4 cut(s)	53, 104, 897, 1078
DraI	TTTAAA	5 cut(s)	73, 313, 573, 1063, 1204
EaeI	YGGCCR	1 cut(s)	983
Eco130I	CCWWGG	1 cut(s)	1377
Eco31I	GGTCTC	1 cut(s)	1186
Eco47I	GGWCC	1 cut(s)	1310
Eco57I	CTGAAG	2 cut(s)	1050, 1610
Eco72I	CACGTG	1 cut(s)	1316
Eco88I	CYCGRG	1 cut(s)	1408
EcoRI	GAATTC	1 cut(s)	1333
EcoT14I	CCWWGG	1 cut(s)	1377
ErhI	CCWWGG	1 cut(s)	1377
Esp3I	CGTCTC	2 cut(s)	191, 1388
FaeI	CATG	3 cut(s)	669, 1310, 1348
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	3 cut(s)	665, 1306, 1344
FauNDI	CATATG	1 cut(s)	1176
FbaI	TGATCA	1 cut(s)	897
FblI	GTMKAC	2 cut(s)	694, 875
FokI	GGATG	1 cut(s)	930
FspBI	CTAG	2 cut(s)	888, 1053
HaeIII	GGCC	4 cut(s)	518, 565, 598, 985
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	1421
Hin1I	GRCGYC	1 cut(s)	1432
Hin1II	CATG	3 cut(s)	669, 1310, 1348
HindIII	AAGCTT	2 cut(s)	192, 1070
HinfI	GANTC	7 cut(s)	128, 440, 502, 580, 719, 1229, 1303
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	4 cut(s)	434, 560, 836, 1671
Hpy166II	GTNNAC	3 cut(s)	695, 876, 1313
Hpy188I	TCNGA	4 cut(s)	439, 1222, 1510, 1606
Hpy188III	TCNNGA	8 cut(s)	242, 653, 819, 911, 947, 1053, 1101, 1436
Hpy8I	GTNNAC	3 cut(s)	695, 876, 1313
Hpy99I	CGWCG	1 cut(s)	1437
HpyAV	CCTTC	3 cut(s)	213, 530, 1280
HpyCH4III	ACNGT	3 cut(s)	733, 1399, 1617
HpyCH4IV	ACGT	2 cut(s)	677, 1315
HpyCH4V	TGCA	6 cut(s)	728, 812, 836, 1127, 1344, 1362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	1 cut(s)	1245
HpySE526I	ACGT	2 cut(s)	677, 1315
Hsp92I	GRCGYC	1 cut(s)	1432
Hsp92II	CATG	3 cut(s)	669, 1310, 1348
Ksp22I	TGATCA	1 cut(s)	897
Kzo9I	GATC	4 cut(s)	53, 104, 897, 1078
LmnI	GCTCC	1 cut(s)	23
LweI	GCATC	5 cut(s)	799, 823, 904, 1114, 1226
MaeI	CTAG	2 cut(s)	888, 1053
MaeII	ACGT	2 cut(s)	677, 1315
MaeIII	GTNAC	3 cut(s)	490, 1019, 1248
MalI	GATC	4 cut(s)	55, 106, 899, 1080
MboI	GATC	4 cut(s)	53, 104, 897, 1078
MboII	GAAGA	4 cut(s)	563, 1043, 1329, 1616
MfeI	CAATTG	1 cut(s)	1327
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	1615
MlsI	TGGCCA	1 cut(s)	985
MluNI	TGGCCA	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	137, 434
MnlI	CCTC	9 cut(s)	469, 683, 730, 733, 774, 815, 1111, 1151, 1176
Mox20I	TGGCCA	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	985
MslI	CAYNNNNRTG	1 cut(s)	1539
Msp20I	TGGCCA	1 cut(s)	985
MspA1I	CMGCKG	1 cut(s)	1244
MspI	CCGG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	1327
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeI	CATATG	1 cut(s)	1176
NdeII	GATC	4 cut(s)	53, 104, 897, 1078
NlaIII	CATG	3 cut(s)	669, 1310, 1348
NspI	RCATGY	1 cut(s)	1348
NspV	TTCGAA	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	1348
PfeI	GAWTC	5 cut(s)	502, 580, 719, 1229, 1303
PflMI	CCANNNNNTGG	1 cut(s)	368
PleI	GAGTC	2 cut(s)	136, 434
PmaCI	CACGTG	1 cut(s)	1316
PmlI	CACGTG	1 cut(s)	1316
PpsI	GAGTC	2 cut(s)	136, 434
Ppu21I	YACGTR	1 cut(s)	1316
PshBI	ATTAAT	1 cut(s)	45
PsiI	TTATAA	5 cut(s)	591, 959, 995, 1503, 1571
PspCI	CACGTG	1 cut(s)	1316
PspPI	GGNCC	2 cut(s)	517, 1310
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	1244
RseI	CAYNNNNRTG	1 cut(s)	1539
Sau3AI	GATC	4 cut(s)	53, 104, 897, 1078
Sau96I	GGNCC	2 cut(s)	517, 1310
SchI	GAGTC	2 cut(s)	137, 434
SduI	GDGCHC	1 cut(s)	1615
SfaNI	GCATC	5 cut(s)	799, 823, 904, 1114, 1226
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	1 cut(s)	1310
SmiI	ATTTAAAT	1 cut(s)	1204
SmiMI	CAYNNNNRTG	1 cut(s)	1539
SphI	GCATGC	1 cut(s)	1348
SspI	AATATT	4 cut(s)	710, 1059, 1577, 1650
SspMI	CTAG	2 cut(s)	888, 1053
StyI	CCWWGG	1 cut(s)	1377
SwaI	ATTTAAAT	1 cut(s)	1204
TaaI	ACNGT	3 cut(s)	733, 1399, 1617
TaiI	ACGT	2 cut(s)	680, 1318
TaqI	TCGA	1 cut(s)	292
TfiI	GAWTC	5 cut(s)	502, 580, 719, 1229, 1303
TspGWI	ACGGA	2 cut(s)	66, 531
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	1310
VspI	ATTAAT	1 cut(s)	45
XbaI	TCTAGA	1 cut(s)	1052
XceI	RCATGY	1 cut(s)	1348
XmiI	GTMKAC	2 cut(s)	694, 875
XspI	CTAG	2 cut(s)	888, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.