Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

29414359 .. 29417150

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCTACAGAGAATCACAAAGTTACATCCTAAGTACATGGCTCTTCAATATCCTCTTCTTTTCCCATATGGTGAAGATGGGTACAGAAAAGGACTTCCTTGGAATCCAAATTTTAGGGGGAAAAAACCAAAGAATGGGGGGGGTAACAATGAGAGCATTTTTGGGTTATCAAATTCAGGATAGACCAGGACAAAGTGACACCCTGTTAAAAGGCGGCAGATTGTTTCAACAATACTTAGTTGACGCATATGCGACTCTTGAAGAAGATCGGTTAGACTTCATTAGGTTAAATCAAGATTCTTTTAGAGCAGAAGGTCTTAAAGGAATTCATGAAGCTCTCAAAGCAGGAAATGCAAGCAGTTCTGGTGTTGGCAAGAGAGTTATTCTGCCAACTTCGTTTACTGGCAATGTTAGATATATGATAAATAATTATCAGGATGCTATGGCTATATGTCGCCACCATGGAAATCCTGATTTATTTATCACTTTCACCTGCAATGCTAAATGGCCTGAGATTATTGAAGATCTACGTGATAAACCTGGTTGTAAAGCTGAAGACAGGCCAGATTTAACTTCCAGAATTTTTAAAGCAAAACTTGACCATTTGATAAAATACCTCAAGTCAGGAAAACCTTTTGGTGTTGTCGAATCAGTGATTTACACGGTGGAGTTCCAAAAAAGAGGTCTTCCTCATTGTCATATCTTGCTCTGGGTTAATAAACATTATAAGTGTCATTCGCCTTATGATGTTGATTCTATCATTTCGGCTGAGATTCCTAATGAAGGATGTGACAAAGCTGGGTATGATGCAGTTTCGCAATACATGATACACGGCCCATGTGGTGTTGCGAATCAATTTTCACCTTGCATGAAAGAAAACAAATGTTCAAAAAAATTTCCTAAATCTTTCACAAGTGAAACCACTTTTTCCACAGAGGGATTCGTTGTATATAAGCGTCGAGATATAGAGAATCTGTTTTTCATACCTTTGGCCCTGTTTAACAATTTTTTTCTTAAAGCAAAACATGAGGCTTTCGAAAGCAAATCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

352

Amino Acids

39.93

Weight (kDa)

8.8

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
AarI	CACCTGC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	136
AciI	CCGC	1 cut(s)	216
AcsI	RAATTY	5 cut(s)	111, 174, 327, 582, 896
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	2 cut(s)	37, 85
AfiI	CCNNNNNNNGG	2 cut(s)	136, 785
AgsI	TTSAA	5 cut(s)	49, 230, 263, 524, 891
AjnI	CCWGG	2 cut(s)	187, 541
AluBI	AGCT	3 cut(s)	338, 554, 800
AluI	AGCT	3 cut(s)	338, 554, 800
AoxI	GGCC	5 cut(s)	3, 509, 563, 835, 993
ApoI	RAATTY	5 cut(s)	111, 174, 327, 582, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	670, 702
AspS9I	GGNCC	2 cut(s)	836, 994
AsuHPI	GGTGA	3 cut(s)	85, 484, 855
AsuII	TTCGAA	1 cut(s)	1038
BbsI	GAAGAC	2 cut(s)	564, 680
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	850
BciT130I	CCWGG	2 cut(s)	189, 543
BfmI	CTRYAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	189, 543
BmgT120I	GGNCC	2 cut(s)	836, 994
BmrFI	CCNGG	2 cut(s)	189, 543
BmsI	GCATC	2 cut(s)	430, 799
BpiI	GAAGAC	2 cut(s)	564, 680
Bpu14I	TTCGAA	1 cut(s)	1038
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	100, 463
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 785
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	2 cut(s)	415, 505
BseBI	CCWGG	2 cut(s)	189, 543
BseDI	CCNNGG	2 cut(s)	100, 463
BseGI	GGATG	3 cut(s)	27, 445, 794
BseLI	CCNNNNNNNGG	2 cut(s)	136, 785
BseMI	GCAATG	2 cut(s)	415, 505
BseMII	CTCAG	2 cut(s)	504, 762
BseNI	ACTGG	1 cut(s)	409
BseYI	CCCAGC	1 cut(s)	800
BshFI	GGCC	5 cut(s)	5, 511, 565, 837, 995
BslI	CCNNNNNNNGG	2 cut(s)	136, 785
BsnI	GGCC	5 cut(s)	5, 511, 565, 837, 995
Bsp119I	TTCGAA	1 cut(s)	1038
Bsp143I	GATC	2 cut(s)	268, 526
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	5 cut(s)	5, 511, 565, 837, 995
BspCNI	CTCAG	2 cut(s)	505, 763
BspHI	TCATGA	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	503
BspQI	GCTCTTC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	1038
BsrDI	GCAATG	2 cut(s)	415, 505
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	100, 463
BssMI	GATC	2 cut(s)	268, 526
BssT1I	CCWWGG	2 cut(s)	100, 463
Bst2UI	CCWGG	2 cut(s)	189, 543
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	2 cut(s)	50, 62
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	1038
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	4 cut(s)	32, 238, 513, 771
BstDSI	CCRYGG	1 cut(s)	463
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	27, 445, 794
BstKTI	GATC	2 cut(s)	271, 529
BstMBI	GATC	2 cut(s)	268, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 353
BstNI	CCWGG	2 cut(s)	189, 543
BstSCI	CCNGG	2 cut(s)	187, 541
BstSFI	CTRYAG	1 cut(s)	7
BstV2I	GAAGAC	2 cut(s)	564, 680
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	5 cut(s)	5, 511, 565, 837, 995
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	27, 445, 794
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	836, 994
CseI	GACGC	2 cut(s)	254, 947
CsiI	ACCWGGT	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	36, 84
CviAII	CATG	7 cut(s)	39, 332, 464, 826, 840, 871, 1028
CviQI	GTAC	2 cut(s)	36, 84
DdeI	CTNAG	4 cut(s)	32, 238, 513, 771
DpnI	GATC	2 cut(s)	270, 528
DpnII	GATC	2 cut(s)	268, 526
DraI	TTTAAA	1 cut(s)	589
Eam1104I	CTCTTC	2 cut(s)	50, 62
EarI	CTCTTC	2 cut(s)	50, 62
Eco130I	CCWWGG	2 cut(s)	100, 463
Eco57I	CTGAAG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	187, 541
EcoT14I	CCWWGG	2 cut(s)	100, 463
ErhI	CCWWGG	2 cut(s)	100, 463
FaeI	CATG	7 cut(s)	42, 335, 467, 829, 843, 874, 1031
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FatI	CATG	7 cut(s)	38, 331, 463, 825, 839, 870, 1027
FauNDI	CATATG	2 cut(s)	69, 250
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	3 cut(s)	14, 452, 801
Fsp4HI	GCNGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	217
GsaI	CCCAGC	1 cut(s)	804
HaeIII	GGCC	5 cut(s)	5, 511, 565, 837, 995
HgaI	GACGC	2 cut(s)	254, 947
Hin1II	CATG	7 cut(s)	42, 335, 467, 829, 843, 874, 1031
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HphI	GGTGA	3 cut(s)	85, 484, 855
Hpy166II	GTNNAC	2 cut(s)	244, 402
Hpy8I	GTNNAC	2 cut(s)	244, 402
Hpy99I	CGWCG	1 cut(s)	963
HpyAV	CCTTC	2 cut(s)	308, 779
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	4 cut(s)	356, 498, 812, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 353
HpyF3I	CTNAG	4 cut(s)	32, 238, 513, 771
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	7 cut(s)	42, 335, 467, 829, 843, 874, 1031
Kzo9I	GATC	2 cut(s)	268, 526
LguI	GCTCTTC	1 cut(s)	50
LweI	GCATC	2 cut(s)	430, 799
MabI	ACCWGGT	1 cut(s)	541
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	4 cut(s)	23, 145, 197, 791
MalI	GATC	2 cut(s)	270, 528
MboI	GATC	2 cut(s)	268, 526
MboII	GAAGA	8 cut(s)	37, 49, 88, 275, 278, 536, 569, 680
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	8 cut(s)	111, 174, 327, 430, 582, 857, 896, 1006
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	65, 629, 677, 702, 931, 1024
MseI	TTAA	8 cut(s)	209, 290, 321, 572, 588, 717, 1002, 1017
MspR9I	CCNGG	2 cut(s)	189, 543
MvaI	CCWGG	2 cut(s)	189, 543
MwoI	GCNNNNNNNGC	2 cut(s)	344, 353
NcoI	CCATGG	1 cut(s)	463
NdeI	CATATG	2 cut(s)	69, 250
NdeII	GATC	2 cut(s)	268, 526
NlaIII	CATG	7 cut(s)	42, 335, 467, 829, 843, 874, 1031
NmuCI	GTSAC	2 cut(s)	197, 791
NspV	TTCGAA	1 cut(s)	1038
PagI	TCATGA	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	50
PfeI	GAWTC	9 cut(s)	14, 105, 299, 650, 755, 775, 853, 942, 973
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	533
PsiI	TTATAA	1 cut(s)	729
Psp6I	CCWGG	2 cut(s)	187, 541
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	2 cut(s)	187, 541
PspPI	GGNCC	2 cut(s)	836, 994
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	2 cut(s)	37, 85
RsaNI	GTAC	2 cut(s)	36, 84
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	8 cut(s)	209, 290, 321, 572, 588, 717, 1002, 1017
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	268, 526
Sau96I	GGNCC	2 cut(s)	836, 994
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	189, 543
SexAI	ACCWGGT	1 cut(s)	541
SfaNI	GCATC	2 cut(s)	430, 799
SfcI	CTRYAG	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	1038
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	8 cut(s)	111, 174, 327, 430, 582, 857, 896, 1006
SsiI	CCGC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	187, 541
StyI	CCWWGG	2 cut(s)	100, 463
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	648, 961, 1038
TasI	AATT	8 cut(s)	111, 174, 327, 430, 582, 857, 896, 1006
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	9 cut(s)	14, 105, 299, 650, 755, 775, 853, 942, 973
Tru1I	TTAA	8 cut(s)	209, 290, 321, 572, 588, 717, 1002, 1017
Tru9I	TTAA	8 cut(s)	209, 290, 321, 572, 588, 717, 1002, 1017
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	2 cut(s)	197, 791
Tsp45I	GTSAC	2 cut(s)	197, 791
TspDTI	ATGAA	6 cut(s)	271, 320, 348, 798, 887, 973
TspRI	CASTG	1 cut(s)	660
Van91I	CCANNNNNTGG	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	783
XapI	RAATTY	5 cut(s)	111, 174, 327, 582, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.