Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

19616576 .. 19618998

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATTAACAATTATCAAGATGCTATGGCTATCTGTAGAGAACATGGACATCCTGATTTGTTCATAACATTTACCTGTAATATAAAGTGGCCACAAATTATGGGAGAAATTGCAAAAAAATCGGGATTCAAACCTGAGGACAGACCTGATATAATTTCCAGAATATTTAAAATGAAACTTGATGATATGCTTGACTTCATCAAATCTGGAAAGCCTTTTGGAGAAGTTGAAGCAATTTATAGGTGTCGTGATGATGATACAAAATTTGTTTTAAAAAATGGAATCAAAATTGATAACAGCTTTGTTGTTCCTTATAATCCTGAACTACTTTTGAGGTATAATGCTCATATAAATGTTGAATCCTGTTGTCAATCAATGCTTATAAAATATTTGTTCAAATATGTAAATAAAGGTTCAGATAGAAATAGTACTGGAATAACTTTTTTATGGGATGCTATAATAAGTAGACTTCGATCTGAAGGAAAAATTGTTTTAGCAGTGGCATCATCCGGAATAGCATCGTTGTTATTACTAGATTTAATTATATGGGATGAAGCACCTATGATTCATAAACATTGTTTTGAAGCATTGGATAAATCACTTTCTGACATTTTGTCACATTTACATGGTTCACAAAGTAATATCCCATTTGGTGGTAAACCTATTTTATTAGGTGGTGATTTTCGACAAATATTACCTGTTATACCTAGAGGAACCAGAGAAGATATAATAAATGCTTCTCTAAATACTTCTTATTTGTGGTCACATTTTAAAAATTTTCATTTGAAAGAAAATATGAGGTTATCAAGAAATGGATTAAGCAATGAAGAAAAGAAAAAAAATCAACGATTTTGCAAATTGGATTTTACAAATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

293

Amino Acids

33.52

Weight (kDa)

8.86

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	315, 383
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	466
AccIII	TCCGGA	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	263, 775
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	6 cut(s)	130, 230, 359, 397, 584, 787
AhdI	GACNNNNNGTC	1 cut(s)	613
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	509
AoxI	GGCC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	263, 775
AsuHPI	GGTGA	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BfaI	CTAG	2 cut(s)	533, 708
BfmI	CTRYAG	1 cut(s)	34
BmcAI	AGTACT	1 cut(s)	430
BmeRI	GACNNNNNGTC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	715
BmsI	GCATC	4 cut(s)	10, 442, 512, 527
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse1I	ACTGG	1 cut(s)	436
Bse21I	CCTNAGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	829
BseAI	TCCGGA	1 cut(s)	509
BseGI	GGATG	4 cut(s)	49, 457, 506, 556
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	436
BshFI	GGCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	653
BsnI	GGCC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	509
BspLI	GGNNCC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	436
BssMI	GATC	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	4 cut(s)	49, 457, 506, 556
BstKTI	GATC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	49, 457, 506, 556
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	2 cut(s)	44, 626
CviJI	RGCY	4 cut(s)	29, 91, 214, 300
CviKI_1	RGCY	4 cut(s)	29, 91, 214, 300
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	475
DpnII	GATC	1 cut(s)	473
DraI	TTTAAA	3 cut(s)	169, 273, 772
DriI	GACNNNNNGTC	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	47, 629
FatI	CATG	2 cut(s)	43, 625
FblI	GTMKAC	1 cut(s)	466
FokI	GGATG	4 cut(s)	36, 464, 493, 563
FspBI	CTAG	2 cut(s)	533, 708
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	2 cut(s)	47, 629
HinfI	GANTC	4 cut(s)	126, 282, 359, 565
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	3 cut(s)	467, 632, 659
Hpy188I	TCNGA	3 cut(s)	418, 478, 607
Hpy188III	TCNNGA	9 cut(s)	17, 53, 123, 159, 207, 248, 320, 510, 807
Hpy8I	GTNNAC	3 cut(s)	467, 632, 659
HpyAV	CCTTC	1 cut(s)	473
HpyCH4V	TGCA	2 cut(s)	113, 855
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	47, 629
Kpn2I	TCCGGA	1 cut(s)	509
Kzo9I	GATC	1 cut(s)	473
LweI	GCATC	4 cut(s)	10, 442, 512, 527
MaeI	CTAG	2 cut(s)	533, 708
MaeIII	GTNAC	2 cut(s)	615, 762
MalI	GATC	1 cut(s)	475
MboI	GATC	1 cut(s)	473
MboII	GAAGA	2 cut(s)	734, 839
MlsI	TGGCCA	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	91
MnlI	CCTC	4 cut(s)	130, 327, 704, 792
Mox20I	TGGCCA	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	6 cut(s)	6, 168, 272, 539, 771, 818
MslI	CAYNNNNRTG	2 cut(s)	351, 624
Msp20I	TGGCCA	1 cut(s)	91
MspI	CCGG	1 cut(s)	510
NdeII	GATC	1 cut(s)	473
NlaIII	CATG	2 cut(s)	47, 629
NlaIV	GGNNCC	1 cut(s)	715
NmuCI	GTSAC	2 cut(s)	615, 762
PfeI	GAWTC	4 cut(s)	126, 282, 359, 565
PflMI	CCANNNNNTGG	1 cut(s)	653
PsiI	TTATAA	2 cut(s)	315, 383
PspN4I	GGNNCC	1 cut(s)	715
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	351, 624
SaqAI	TTAA	6 cut(s)	6, 168, 272, 539, 771, 818
Sau3AI	GATC	1 cut(s)	473
ScaI	AGTACT	1 cut(s)	430
SfaNI	GCATC	4 cut(s)	10, 442, 512, 527
SfcI	CTRYAG	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	351, 624
SspI	AATATT	3 cut(s)	165, 389, 693
SspMI	CTAG	2 cut(s)	533, 708
TaqI	TCGA	2 cut(s)	472, 685
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	4 cut(s)	126, 282, 359, 565
Tru1I	TTAA	6 cut(s)	6, 168, 272, 539, 771, 818
Tru9I	TTAA	6 cut(s)	6, 168, 272, 539, 771, 818
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	2 cut(s)	615, 762
Tsp45I	GTSAC	2 cut(s)	615, 762
TspDTI	ATGAA	7 cut(s)	52, 187, 188, 557, 567, 770, 840
TspRI	CASTG	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	653
XapI	RAATTY	2 cut(s)	263, 775
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	2 cut(s)	533, 708
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.