Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

28418469 .. 28423990

Gene Structure 5522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGTTCTCATTTACTTCAATGGGTGCCAAAGTTGATCACTCAATTAATGATGGGTCAAGCCCTTATATTTTCAAAATTAGTGGGCAAGTTTGTCATCTAATGGGATCTCTTTTACCAGTTGACAATGAGTCTCCAAAGTTTGCTCAATTGTATATTTATGATACATATAATGAAGTTCAGAATCGTCTTAGAGCTTTTGAATCTGATGGAAATAATAAAAAACTTGATCCAAAAATTGTTGAAGGTTTGATTAAAATGTTTGATGCATCAAATAAGTTAGTTAAGCTATTTCGAACAGCAAGGGATAAATATGAAACTGATGGACTAATTTCTTTAAAAATGAGAATATTAGCAAGAGAACTAACGGATAGCAAGCAATATGACCAACCAACAAGTGATGAATTAAGTGGTTTAATAGTTGGTGATATAGGACTTGCTGATTCTAATAGAGATATTATTATAGAGTCTAAAAGTGAAGGGTTAAAGCGTGTCACAAAATTAAATCCAAAATTTATGTCTTTGCAATATCCTATTCTTTTTCCATATGGTGAAGATGGGTATAGACCAGATTTAAAGTGGAGTAAAAATTATAAAGGTCCAAAAACTAAAAGACAAAGAATACCCATGAGAGCTTTTATAGCTTACCAAATTCAAGAACGAGACCCATGTTTAACAACATTGTTAAAAGGAGGAAGACTTTTTCAACAATATTTGGTAGATTCTTATACAACACTTGAAGAAGATAGGTTGGATTACATTAGACAAAACCAAAAAAATTTAAGAAGTGAGGTTTACAAAGGGATTTATGATGCGGTGGCAAAGGGTGATAACGATGCAAGTAATTTGGGCCAAAAAATTGTGTTGCCAGCTTCATATACAGGAAGTCCTAGATATATGATTAATAATTATCATGATGCAATGGCTATTTGTCGAGAAGATGGACTTCCTGATTTGTTCATAACATTTACTTGCAATATAAAATGGCCAGAAATTGTTAGAGAATTTGAGAAAAAACCAGGATTCAAACCTGAGGATAGGCCTGATATAATTTCCCGCATGTTTAAAATGAAACTTGATGATATGCTTGACTTTATAAAATCTGGAAAGCCTTTTGGAGAAGTTGAAATGTCATCCAAATTCTTATATGATGCGCGAAAGAAATGTTGGAAACCGAGAAAACGCAAAGGATCAATTGGCAGAATAGCATATGTGCACCCTGCATCTGGAAAATTGATGGCAACAACTACAAACAGATACATTCGGCTCCCACTTTTGACATTAAATCGAAGAACAGGCACCAAAAACTGGAAACTGGTTCACATTTTTCCAAAAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N PIF1

Protein Analysis

447

Amino Acids

51.46

Weight (kDa)

9.44

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	591, 1094
AccB1I	GGYRCC	2 cut(s)	23, 1295
AccB7I	CCANNNNNTGG	1 cut(s)	1305
AccII	CGCG	1 cut(s)	1153
AciI	CCGC	2 cut(s)	812, 1054
AclWI	GGATC	3 cut(s)	112, 221, 1195
AcoI	YGGCCR	1 cut(s)	983
AcsI	RAATTY	5 cut(s)	509, 648, 775, 1001, 1136
AfiI	CCNNNNNNNGG	2 cut(s)	1223, 1305
AgsI	TTSAA	9 cut(s)	18, 73, 200, 242, 653, 704, 737, 1024, 1124
AhdI	GACNNNNNGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	1147, 1179
AluBI	AGCT	5 cut(s)	194, 286, 632, 641, 869
AluI	AGCT	5 cut(s)	194, 286, 632, 641, 869
Alw21I	GWGCWC	1 cut(s)	1215
Alw26I	GTCTC	2 cut(s)	135, 654
Alw44I	GTGCAC	1 cut(s)	1211
AlwI	GGATC	3 cut(s)	112, 221, 1195
AoxI	GGCC	3 cut(s)	847, 983, 1037
ApaLI	GTGCAC	1 cut(s)	1211
ApoI	RAATTY	5 cut(s)	509, 648, 775, 1001, 1136
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AseI	ATTAAT	2 cut(s)	45, 900
AspLEI	GCGC	1 cut(s)	1153
AspS9I	GGNCC	2 cut(s)	596, 847
AsuHPI	GGTGA	3 cut(s)	434, 560, 836
AsuII	TTCGAA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	1029
BaeGI	GKGCMC	1 cut(s)	1215
BalI	TGGCCA	1 cut(s)	985
BanI	GGYRCC	2 cut(s)	23, 1295
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	1215
BccI	CCATC	6 cut(s)	44, 200, 314, 548, 932, 1228
BciT130I	CCWGG	1 cut(s)	1017
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	135, 654
BfaI	CTAG	1 cut(s)	888
Bme1390I	CCNGG	1 cut(s)	1017
Bme18I	GGWCC	1 cut(s)	596
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	596, 847
BmiI	GGNNCC	3 cut(s)	25, 1265, 1297
BmrFI	CCNGG	1 cut(s)	1017
BmsI	GCATC	7 cut(s)	253, 275, 799, 823, 904, 1138, 1229
BpiI	GAAGAC	1 cut(s)	700
Bpu14I	TTCGAA	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	2 cut(s)	1223, 1305
Bse1I	ACTGG	3 cut(s)	116, 1310, 1317
Bse21I	CCTNAGG	1 cut(s)	1029
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	1017
BseGI	GGATG	1 cut(s)	1130
BseLI	CCNNNNNNNGG	2 cut(s)	1223, 1305
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	1 cut(s)	1020
BseNI	ACTGG	3 cut(s)	116, 1310, 1317
BseSI	GKGCMC	1 cut(s)	1215
Bsh1236I	CGCG	1 cut(s)	1153
BshFI	GGCC	3 cut(s)	849, 985, 1039
BshNI	GGYRCC	2 cut(s)	23, 1295
BsiHKAI	GWGCWC	1 cut(s)	1215
BslI	CCNNNNNNNGG	2 cut(s)	1223, 1305
BsmAI	GTCTC	2 cut(s)	135, 654
BsnI	GGCC	3 cut(s)	849, 985, 1039
Bso31I	GGTCTC	1 cut(s)	654
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	1215
Bsp143I	GATC	4 cut(s)	34, 104, 226, 1187
BspACI	CCGC	2 cut(s)	812, 1054
BspANI	GGCC	3 cut(s)	849, 985, 1039
BspCNI	CTCAG	1 cut(s)	1021
BspFNI	CGCG	1 cut(s)	1153
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	3 cut(s)	25, 1265, 1297
BspPI	GGATC	3 cut(s)	112, 221, 1195
BspT104I	TTCGAA	1 cut(s)	292
BspT107I	GGYRCC	2 cut(s)	23, 1295
BspTNI	GGTCTC	1 cut(s)	654
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	3 cut(s)	116, 1310, 1317
BssMI	GATC	4 cut(s)	34, 104, 226, 1187
Bst2UI	CCWGG	1 cut(s)	1017
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	374, 867
BstDEI	CTNAG	2 cut(s)	188, 1029
BstF5I	GGATG	1 cut(s)	1130
BstFNI	CGCG	1 cut(s)	1153
BstHHI	GCGC	1 cut(s)	1153
BstKTI	GATC	4 cut(s)	37, 107, 229, 1190
BstMAI	GTCTC	2 cut(s)	135, 654
BstMBI	GATC	4 cut(s)	34, 104, 226, 1187
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	1 cut(s)	1017
BstNSI	RCATGY	1 cut(s)	1060
BstSCI	CCNGG	1 cut(s)	1015
BstSLI	GKGCMC	1 cut(s)	1215
BstUI	CGCG	1 cut(s)	1153
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	1029
BsuRI	GGCC	3 cut(s)	849, 985, 1039
BtsCI	GGATG	1 cut(s)	1130
Cac8I	GCNNGC	2 cut(s)	374, 867
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	1 cut(s)	1153
Cfr13I	GGNCC	2 cut(s)	596, 847
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	4 cut(s)	625, 666, 911, 1057
DdeI	CTNAG	2 cut(s)	188, 1029
DpnI	GATC	4 cut(s)	36, 106, 228, 1189
DpnII	GATC	4 cut(s)	34, 104, 226, 1187
DraI	TTTAAA	3 cut(s)	336, 573, 1063
DriI	GACNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	983
Eam1105I	GACNNNNNGTC	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	1039
Eco31I	GGTCTC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	596
Eco81I	CCTNAGG	1 cut(s)	1029
EcoRII	CCWGG	1 cut(s)	1015
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	4 cut(s)	628, 669, 914, 1060
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FatI	CATG	4 cut(s)	624, 665, 910, 1056
FauI	CCCGC	1 cut(s)	1061
FauNDI	CATATG	2 cut(s)	544, 1207
FbaI	TGATCA	1 cut(s)	34
FokI	GGATG	1 cut(s)	1117
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	1 cut(s)	1152
HaeIII	GGCC	3 cut(s)	849, 985, 1039
HhaI	GCGC	1 cut(s)	1153
Hin1II	CATG	4 cut(s)	628, 669, 914, 1060
Hin6I	GCGC	1 cut(s)	1151
HinP1I	GCGC	1 cut(s)	1151
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	7 cut(s)	128, 181, 200, 440, 464, 719, 1020
HphI	GGTGA	3 cut(s)	434, 560, 836
Hpy166II	GTNNAC	4 cut(s)	121, 793, 1213, 1318
Hpy188I	TCNGA	2 cut(s)	180, 205
Hpy188III	TCNNGA	6 cut(s)	653, 911, 932, 947, 1101, 1224
Hpy8I	GTNNAC	4 cut(s)	121, 793, 1213, 1318
HpyAV	CCTTC	2 cut(s)	236, 470
HpyCH4V	TGCA	7 cut(s)	266, 523, 836, 917, 972, 1213, 1220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	188, 1029
Hsp92II	CATG	4 cut(s)	628, 669, 914, 1060
HspAI	GCGC	1 cut(s)	1151
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	34, 104, 226, 1187
LmnI	GCTCC	1 cut(s)	1269
LweI	GCATC	7 cut(s)	253, 275, 799, 823, 904, 1138, 1229
MaeI	CTAG	1 cut(s)	888
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	4 cut(s)	36, 106, 228, 1189
MboI	GATC	4 cut(s)	34, 104, 226, 1187
MboII	GAAGA	6 cut(s)	563, 705, 749, 752, 947, 1299
MfeI	CAATTG	2 cut(s)	146, 1191
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	1215
MlsI	TGGCCA	1 cut(s)	985
MluNI	TGGCCA	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	137, 473
MmeI	TCCRAC	2 cut(s)	729, 1145
MnlI	CCTC	3 cut(s)	683, 781, 1024
Mox20I	TGGCCA	1 cut(s)	985
Mph1103I	ATGCAT	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	985
Msp20I	TGGCCA	1 cut(s)	985
MspR9I	CCNGG	1 cut(s)	1017
MunI	CAATTG	2 cut(s)	146, 1191
MvaI	CCWGG	1 cut(s)	1017
MvnI	CGCG	1 cut(s)	1153
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeI	CATATG	2 cut(s)	544, 1207
NdeII	GATC	4 cut(s)	34, 104, 226, 1187
NlaIII	CATG	4 cut(s)	628, 669, 914, 1060
NlaIV	GGNNCC	3 cut(s)	25, 1265, 1297
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	1060
NspV	TTCGAA	1 cut(s)	292
PagI	TCATGA	1 cut(s)	910
PceI	AGGCCT	1 cut(s)	1039
PfeI	GAWTC	5 cut(s)	181, 200, 440, 719, 1020
PflMI	CCANNNNNTGG	1 cut(s)	1305
PleI	GAGTC	2 cut(s)	136, 472
PpsI	GAGTC	2 cut(s)	136, 472
PshBI	ATTAAT	2 cut(s)	45, 900
PsiI	TTATAA	2 cut(s)	591, 1094
Psp6I	CCWGG	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	1015
PspN4I	GGNNCC	3 cut(s)	25, 1265, 1297
PspPI	GGNCC	2 cut(s)	596, 847
PsuI	RGATCY	1 cut(s)	104
Sau3AI	GATC	4 cut(s)	34, 104, 226, 1187
Sau96I	GGNCC	2 cut(s)	596, 847
SchI	GAGTC	2 cut(s)	137, 473
ScrFI	CCNGG	1 cut(s)	1017
SduI	GDGCHC	1 cut(s)	1215
SfaNI	GCATC	7 cut(s)	253, 275, 799, 823, 904, 1138, 1229
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	1 cut(s)	596
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	2 cut(s)	812, 1054
SspI	AATATT	2 cut(s)	348, 710
SspMI	CTAG	1 cut(s)	888
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	1 cut(s)	1015
TaqI	TCGA	3 cut(s)	292, 931, 1285
TfiI	GAWTC	5 cut(s)	181, 200, 440, 719, 1020
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	6 cut(s)	186, 327, 414, 861, 946, 1082
TspGWI	ACGGA	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	1305
VneI	GTGCAC	1 cut(s)	1211
VpaK11BI	GGWCC	1 cut(s)	596
VspI	ATTAAT	2 cut(s)	45, 900
XapI	RAATTY	5 cut(s)	509, 648, 775, 1001, 1136
XceI	RCATGY	1 cut(s)	1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XspI	CTAG	1 cut(s)	888
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.