Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

86770645 .. 86773957

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAACTTACTCGAATGCGGTGTCAGATCCAATGCCCAAACGGAGAAAAAGTAAGAGAGATTTACTTTTGCAAAATGCTGAAAGTGTTGATAAACGCAAACGAAGAAAGACTACATCTGCTGAAACAAGCTGCAATTCTGGTCCAAGTATGTCCAACATTCAAGAAGTTGAAAAAGTTGTTTTGCATGAACACAGCATTGGACAAGCGTCGTATCAAAGAAACAAGCATGGACCAACTTCTACATATTTGGATTTTGGAGATATGGCTCATGTTTGCACTGATTGTGATGCTCTATTTTGGTTAAACGAATCCAAAAAAAGAGTGTCAAGAAAAGCTGCTCCGATCTATACAAAATGTTGTCAAGAAGGTAGGATCAAACTCCAGACACCGCATCCGACACCACCTTTTTTGGAGAAACTACTTGATCCAAATAATGGTCCGCAAAGTGTGCTCTTTAGACAAAATATAAGAGCCTATAATTCTATGTTTGCGTTTACATCTATTGGAGCTAAAATTGATCGAACAATCAATGATGGATCAGGACCTTATGTTTTTAAAATTAGTGGTCAAGTACATCATCTAATGGGTACTCTGTTGCCTTCTCAAGATGAACCTCCTAAATTTGCACAGCTATATGTTTATGCAGTCAAGATGAAGTTGCAAATCGAATTCAAGCAGTTGACTGTAACAGAACAAATAAAAATCTCGATCCAGACATTGTTAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

9.5

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	3 cut(s)	20, 392, 443
AclWI	GGATC	5 cut(s)	23, 383, 422, 547, 706
AcsI	RAATTY	2 cut(s)	623, 671
AfaI	GTAC	2 cut(s)	576, 592
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	164, 173, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	4 cut(s)	132, 338, 512, 634
AluI	AGCT	4 cut(s)	132, 338, 512, 634
Alw21I	GWGCWC	1 cut(s)	456
AlwI	GGATC	5 cut(s)	23, 383, 422, 547, 706
ApeKI	GCWGC	2 cut(s)	132, 338
ApoI	RAATTY	2 cut(s)	623, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	4 cut(s)	143, 233, 440, 545
AvaII	GGWCC	4 cut(s)	143, 233, 440, 545
BarI	GAAGNNNNNNTAC	2 cut(s)	97, 129
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	119, 325
BccI	CCATC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	133, 339
BlsI	GCNGC	2 cut(s)	134, 340
Bme18I	GGWCC	4 cut(s)	143, 233, 440, 545
BmgT120I	GGNCC	4 cut(s)	143, 233, 440, 545
BmsI	GCATC	2 cut(s)	280, 403
BoxI	GACNNNNGTC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	119, 325
BsiHKAI	GWGCWC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
BspACI	CCGC	3 cut(s)	20, 392, 443
BspPI	GGATC	5 cut(s)	23, 383, 422, 547, 706
BssMI	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
Bst4CI	ACNGT	1 cut(s)	688
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	7 cut(s)	31, 348, 378, 430, 523, 542, 714
BstMBI	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstPAI	GACNNNNGTC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	119, 325
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	143, 233, 440, 545
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	575, 591
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	3 cut(s)	188, 230, 272
CviJI	RGCY	6 cut(s)	132, 269, 338, 476, 512, 634
CviKI_1	RGCY	6 cut(s)	132, 269, 338, 476, 512, 634
CviQI	GTAC	2 cut(s)	575, 591
DpnI	GATC	7 cut(s)	30, 347, 377, 429, 522, 541, 713
DpnII	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
DraI	TTTAAA	1 cut(s)	559
Eco47I	GGWCC	4 cut(s)	143, 233, 440, 545
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	671
FaeI	CATG	3 cut(s)	191, 233, 275
FatI	CATG	3 cut(s)	187, 229, 271
Fnu4HI	GCNGC	2 cut(s)	133, 339
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	133, 339
GluI	GCNGC	2 cut(s)	133, 339
GsuI	CTGGAG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	191, 233, 275
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	498, 684
Hpy188I	TCNGA	3 cut(s)	28, 345, 399
Hpy188III	TCNNGA	9 cut(s)	164, 330, 365, 385, 543, 608, 652, 709, 715
Hpy8I	GTNNAC	2 cut(s)	498, 684
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	362, 612
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4V	TGCA	7 cut(s)	73, 135, 187, 279, 629, 647, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	191, 233, 275
Kzo9I	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
LmnI	GCTCC	2 cut(s)	346, 509
LpnPI	CCDG	4 cut(s)	126, 398, 528, 728
Lsp1109I	GCAGC	2 cut(s)	119, 325
LweI	GCATC	2 cut(s)	280, 403
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	7 cut(s)	30, 347, 377, 429, 522, 541, 713
MboI	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
MboII	GAAGA	1 cut(s)	117
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	6 cut(s)	136, 481, 516, 561, 623, 671
MmeI	TCCRAC	2 cut(s)	180, 422
MnlI	CCTC	1 cut(s)	627
MseI	TTAA	3 cut(s)	305, 558, 725
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	451
NdeII	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
NlaIII	CATG	3 cut(s)	191, 233, 275
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	134, 340
PpuMI	RGGWCCY	1 cut(s)	545
PshAI	GACNNNNGTC	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	545
PspPI	GGNCC	4 cut(s)	143, 233, 440, 545
PspPPI	RGGWCCY	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	576, 592
RsaNI	GTAC	2 cut(s)	575, 591
SaqAI	TTAA	3 cut(s)	305, 558, 725
SatI	GCNGC	2 cut(s)	133, 339
Sau3AI	GATC	7 cut(s)	28, 345, 375, 427, 520, 539, 711
Sau96I	GGNCC	4 cut(s)	143, 233, 440, 545
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	9 cut(s)	134, 340, 373, 409, 514, 550, 619, 636, 732
SfaNI	GCATC	2 cut(s)	280, 403
SinI	GGWCC	4 cut(s)	143, 233, 440, 545
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	6 cut(s)	136, 481, 516, 561, 623, 671
SsiI	CCGC	3 cut(s)	20, 392, 443
TaaI	ACNGT	1 cut(s)	688
TaqI	TCGA	4 cut(s)	14, 523, 669, 710
TasI	AATT	6 cut(s)	136, 481, 516, 561, 623, 671
TatI	WGTACW	1 cut(s)	574
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	3 cut(s)	305, 558, 725
Tru9I	TTAA	3 cut(s)	305, 558, 725
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	132, 338
TspDTI	ATGAA	3 cut(s)	204, 627, 671
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	4 cut(s)	143, 233, 440, 545
XapI	RAATTY	2 cut(s)	623, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.