Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

11415598 .. 11419139

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1146300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTTAAGAAGGTCCAGAGATAGCAAACTGAATAGAATGATACAAGAAGACCACATTGTTGGTTCTTCCAGTGGTATACAAGTTTGTGATAAACCAAGCTTTGAACCTCATAACAAAAGACGAAAAGAAGACCATATTGTTGGTTCTTCCAGTGGCATACAAGTTTGTGATAATCCGAATCAAATTAGTAAAGGTCAAGCCAATTTTCAGAAAAATAAAAAAGGAAATGTTCAGAAATATGTGGATTTGGGAGACAAGAATTATAAATGCATCTACTGTGGTGCATATTTTTGGATAAAAGAGTCTCTAAAACAGAAGTCAAAGAATAATGAGCCCCTTTATTCTCTTTGTTGCCAACAAGGAAAAGTCAAGCTCCCACGTCCATTGCCTACTCCTCACTTTTTAGAAAATTTGCTTGACCCAACTAAAGGCCAAAAAAGTTTATTGTTTAGAGAGAACATCAGAGCTTATAATTCTATGTTTGCATTCACTTCATTGGGAGCTACAGTTGATCACACAGTTAATAATCAATCAGGTCCTTACATTTTCAAAATTAGTGGTCAAGTACATCATTTAATGGGTTCTTTGTTACCCCCTGATGGTGAATGTCCAAAGTTTGCTCAACTGAAAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N PIF1

Protein Analysis

213

Amino Acids

24.01

Weight (kDa)

9.41

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	264, 471
AccI	GTMKAC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	2 cut(s)	428, 599
AgsI	TTSAA	2 cut(s)	104, 550
AjiI	CACGTC	1 cut(s)	380
AluBI	AGCT	4 cut(s)	99, 373, 467, 503
AluI	AGCT	4 cut(s)	99, 373, 467, 503
Alw26I	GTCTC	2 cut(s)	246, 309
AoxI	GGCC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	12, 536
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	12, 536
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	2 cut(s)	54, 135
BccI	CCATC	1 cut(s)	593
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	246, 309
BfmI	CTRYAG	1 cut(s)	504
Bme18I	GGWCC	2 cut(s)	12, 536
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	12, 536
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	54, 135
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 599
Bse1I	ACTGG	2 cut(s)	69, 150
Bse3DI	GCAATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	2 cut(s)	428, 599
BseMI	GCAATG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	69, 150
BseRI	GAGGAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	428, 599
BsmAI	GTCTC	2 cut(s)	246, 309
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	511
BspANI	GGCC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	69, 150
BssMI	GATC	1 cut(s)	511
BssNAI	GTATAC	1 cut(s)	77
Bst1107I	GTATAC	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	278, 508, 520
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	2 cut(s)	246, 309
BstMBI	GATC	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	504
BstV2I	GAAGAC	2 cut(s)	54, 135
BstXI	CCANNNNNNTGG	2 cut(s)	59, 140
BstZ17I	GTATAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	432
BtrI	CACGTC	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	76, 157
Cfr13I	GGNCC	2 cut(s)	12, 536
Csp6I	GTAC	1 cut(s)	566
CspCI	CAANNNNNGTGG	4 cut(s)	366, 401, 538, 573
CviJI	RGCY	7 cut(s)	99, 200, 334, 373, 432, 467, 503
CviKI_1	RGCY	7 cut(s)	99, 200, 334, 373, 432, 467, 503
CviQI	GTAC	1 cut(s)	566
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	12, 536
EcoO109I	RGGNCCY	1 cut(s)	536
EcoT22I	ATGCAT	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	2 cut(s)	178, 302
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	4 cut(s)	177, 210, 234, 464
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	3 cut(s)	278, 508, 520
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	270, 284, 485
HpySE526I	ACGT	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	1 cut(s)	511
LmnI	GCTCC	2 cut(s)	378, 500
LpnPI	CCDG	5 cut(s)	28, 82, 163, 519, 609
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	4 cut(s)	57, 59, 138, 140
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	6 cut(s)	183, 202, 259, 409, 472, 552
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	2 cut(s)	117, 405
Mph1103I	ATGCAT	1 cut(s)	272
MseI	TTAA	3 cut(s)	5, 522, 575
Mva1269I	GAATGC	1 cut(s)	485
NdeII	GATC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	272
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	536
PsiI	TTATAA	2 cut(s)	264, 471
Psp5II	RGGWCCY	1 cut(s)	536
PspPI	GGNCC	2 cut(s)	12, 536
PspPPI	RGGWCCY	1 cut(s)	536
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SaqAI	TTAA	3 cut(s)	5, 522, 575
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	2 cut(s)	12, 536
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	9 cut(s)	14, 101, 109, 196, 375, 382, 469, 505, 538
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	12, 536
Sse9I	AATT	6 cut(s)	183, 202, 259, 409, 472, 552
TaaI	ACNGT	3 cut(s)	278, 508, 520
TaiI	ACGT	1 cut(s)	382
TasI	AATT	6 cut(s)	183, 202, 259, 409, 472, 552
TatI	WGTACW	1 cut(s)	565
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	3 cut(s)	5, 522, 575
Tru9I	TTAA	3 cut(s)	5, 522, 575
TscAI	CASTG	2 cut(s)	76, 157
TspDTI	ATGAA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	76, 157
VpaK11BI	GGWCC	2 cut(s)	12, 536
XapI	RAATTY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	76
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.