Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

24867898 .. 24869129

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ACTTATGATTGTAATAATTTAGAAAAAGAACACTCAATTTTAGTTACACAGCTCAACAAAGGTAAAAAAGATGTATATGATTGTGTTATAAAAACTGTTGAAGAAAAAATATCAGGCCTCTTTTTTGTCCACGGTCAGGTTGTTGCTTCATCAGGAATAGCATCATTATTATTACCTGGTGGTAGAACGGCTCACTCTAGATTTAAAATTCCCATAATTGTTAACAATTGCTCAACATGTCAAATAAAAAAAGGAACTCATCTCGCCAAATTAATTGAAAAAGCAGCTTTAATTGTTTGGGGCGAAGCTCCTATGAATCACAAACATTGTTTTGAAGCATTAGATAAATCACTTTCTGATATTTTATCGCATATAAATCCTTTAGATAACAATGTTCCATTTCATGGCAAACCTTTACTGTTAGGTGGTGATTTCAGACAAATATTACTAGTTATTCCAGGAGGAACAAGAGAAGAAATAATAGATGCCTCTCTCAATACTTTAAAAATAGGAATGCCTATCATGCTGTTGAGAAACTTAAATCAATCTTCAGGTTTGTGTAATGGAACACGATTAGTTATCACACAATTGTGTGATAAAGTTATCGAAGCAAAAATACTTGCTGGTAGTAACATTGGCCACAAAGTTTTCATACCTCGAATAAGCCTTACAGCTACTAAAAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

230

Amino Acids

25.03

Weight (kDa)

9.17

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	136, 404
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	101, 278, 335
AhlI	ACTAGT	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	175, 457
AleI	CACNNNNGTG	1 cut(s)	589
AluBI	AGCT	4 cut(s)	52, 287, 308, 674
AluI	AGCT	4 cut(s)	52, 287, 308, 674
AoxI	GGCC	2 cut(s)	115, 637
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	207
AseI	ATTAAT	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	639
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BbvI	GCAGC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	177, 459
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	2 cut(s)	198, 449
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	177, 459
BmrFI	CCNGG	2 cut(s)	177, 459
BmsI	GCATC	2 cut(s)	170, 475
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 404
BseBI	CCWGG	2 cut(s)	177, 459
BseDI	CCNNGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	136, 404
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	2 cut(s)	117, 639
BslI	CCNNNNNNNGG	2 cut(s)	136, 404
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	117, 639
BspANI	GGCC	2 cut(s)	117, 639
BssECI	CCNNGG	1 cut(s)	130
Bst2UI	CCWGG	2 cut(s)	177, 459
Bst4CI	ACNGT	3 cut(s)	97, 134, 420
BstDSI	CCRYGG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNI	CCWGG	2 cut(s)	177, 459
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	175, 457
BstV1I	GCAGC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	117, 639
BtgI	CCRYGG	1 cut(s)	130
CsiI	ACCWGGT	1 cut(s)	175
CviAII	CATG	3 cut(s)	237, 404, 523
CviJI	RGCY	8 cut(s)	52, 117, 191, 287, 308, 639, 666, 674
CviKI_1	RGCY	8 cut(s)	52, 117, 191, 287, 308, 639, 666, 674
DraI	TTTAAA	2 cut(s)	205, 504
EaeI	YGGCCR	1 cut(s)	637
Eco147I	AGGCCT	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	175, 457
FaeI	CATG	3 cut(s)	240, 407, 526
FatI	CATG	3 cut(s)	236, 403, 522
Fnu4HI	GCNGC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	198, 449
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	117, 639
Hin1II	CATG	3 cut(s)	240, 407, 526
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	316
HpaI	GTTAAC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	2 cut(s)	130, 223
Hpy188I	TCNGA	2 cut(s)	358, 437
Hpy188III	TCNNGA	2 cut(s)	153, 198
Hpy8I	GTNNAC	2 cut(s)	130, 223
HpyCH4III	ACNGT	3 cut(s)	97, 134, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
Hsp92II	CATG	3 cut(s)	240, 407, 526
KspAI	GTTAAC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	99, 122, 138, 162, 189, 444, 471, 537, 609
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	2 cut(s)	170, 475
MabI	ACCWGGT	1 cut(s)	175
MaeI	CTAG	2 cut(s)	198, 449
MaeIII	GTNAC	2 cut(s)	43, 629
MboII	GAAGA	3 cut(s)	113, 485, 540
MfeI	CAATTG	2 cut(s)	226, 587
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	9 cut(s)	16, 36, 207, 216, 226, 269, 273, 291, 587
MluNI	TGGCCA	1 cut(s)	639
MnlI	CCTC	4 cut(s)	128, 455, 499, 666
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	6 cut(s)	204, 222, 272, 290, 503, 539
MslI	CAYNNNNRTG	1 cut(s)	589
Msp20I	TGGCCA	1 cut(s)	639
MspR9I	CCNGG	2 cut(s)	177, 459
MunI	CAATTG	2 cut(s)	226, 587
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	177, 459
MwoI	GCNNNNNNNGC	1 cut(s)	523
NlaIII	CATG	3 cut(s)	240, 407, 526
NspI	RCATGY	1 cut(s)	240
OliI	CACNNNNGTG	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	117
PciI	ACATGT	1 cut(s)	236
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	286
PscI	ACATGT	1 cut(s)	236
PshBI	ATTAAT	1 cut(s)	272
PsiI	TTATAA	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	175, 457
PspGI	CCWGG	2 cut(s)	175, 457
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	6 cut(s)	204, 222, 272, 290, 503, 539
SatI	GCNGC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	177, 459
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	170, 475
SmiMI	CAYNNNNRTG	1 cut(s)	589
SpeI	ACTAGT	1 cut(s)	448
Sse9I	AATT	9 cut(s)	16, 36, 207, 216, 226, 269, 273, 291, 587
SseBI	AGGCCT	1 cut(s)	117
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	198, 449
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	175, 457
TaaI	ACNGT	3 cut(s)	97, 134, 420
TaqI	TCGA	2 cut(s)	606, 658
TasI	AATT	9 cut(s)	16, 36, 207, 216, 226, 269, 273, 291, 587
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	6 cut(s)	204, 222, 272, 290, 503, 539
Tru9I	TTAA	6 cut(s)	204, 222, 272, 290, 503, 539
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	138, 329, 392, 640
Van91I	CCANNNNNTGG	1 cut(s)	404
VspI	ATTAAT	1 cut(s)	272
XapI	RAATTY	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	197
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	2 cut(s)	198, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.