Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004733.1

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Forward (+)

29023 .. 30672

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004733.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atggaaacttactcgaatgcggtgtcagatccaatgcccaaacggagaaaaagtaagagagatttacttttgcaaaatgctgaaagtgttgataaacgcaaacgaagaaagactacatctgctgaaacaagctgcaattctggtccaagtatgtccaacattcaagaagttgaaaatgttgttttgcatgaacacagcattggacaagcgtcgtatcaaagaaacaagcatggaccaacttctacatatttggattttggagatatggctcatgtttgcactgattgtgatgctctattttggttaaacgaatccaaaaaaagagtgtcaagaaaagccgctccgatctatacaaaatgttgtcaagaaggtaggatcaaactccagacaccgcatcagacaccaccttttttggagaaactacttgatccaaataatggtccgcaaagtgtgctctttagacaaaatataagagcctataattctatgtttgcgtttacatctattggagccaaaattgatcgaacaatcaatgatggatcaggaccttatgtttttaaaattagtggtcaagtacatcatctaatgggtactctgttgccttctcaagatgaacctcctaaatttgcacagctatatgtttatgacaatcaagatgaagttgcaaatcgaattcaagcagttgactgtaacagaacaaataaaaatctcgatccagacattgttaaaggtttgattcagatgtttgatgagaacaatgagttggtcaagtacttccgaacagttaaatataaatttgataataatactttgcggtctttaaatttatcaattttagatcatgaagatgttcgagaaaaacaatatgagcaaccaacatgtaatgaaattgctgagcaaccaacatgtaatgaaattgctggtttaatagttggtgatattgggctttgcgattcaaacaaagacattgtgatagaaatgcatgacggaggtttacaacgagtatcaagattacatccaaaattgatgtcttttcaatatccaattctttttccgtttggcgaagatggttataaaacgagtcttaagatgttttctcctaaaggacaacgacaagctaagcgtgataaagtctctatgcgcagcttcatatcaaattcaagagagatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N REPA_OB_2

Protein Analysis

390

Amino Acids

44.48

Weight (kDa)

8.58

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1074
Acc16I	TGCGCA	1 cut(s)	1142
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	5 cut(s)	20, 339, 392, 443, 814
AclWI	GGATC	5 cut(s)	23, 383, 422, 547, 707
AcsI	RAATTY	5 cut(s)	623, 672, 794, 823, 1156
AfaI	GTAC	3 cut(s)	576, 592, 773
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflII	CTTAAG	1 cut(s)	1085
AflIII	ACRYGT	2 cut(s)	878, 905
AgsI	TTSAA	6 cut(s)	164, 173, 677, 957, 1037, 1161
AjuI	GAANNNNNNNTTGG	4 cut(s)	183, 215, 746, 778
AluBI	AGCT	4 cut(s)	132, 634, 1118, 1146
AluI	AGCT	4 cut(s)	132, 634, 1118, 1146
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	1138
AlwI	GGATC	5 cut(s)	23, 383, 422, 547, 707
ApeKI	GCWGC	2 cut(s)	132, 1143
ApoI	RAATTY	5 cut(s)	623, 672, 794, 823, 1156
ArsI	GACNNNNNNTTYG	4 cut(s)	8, 40, 1013, 1045
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	1143
AspS9I	GGNCC	4 cut(s)	143, 233, 440, 545
AsuHPI	GGTGA	1 cut(s)	947
AvaII	GGWCC	4 cut(s)	143, 233, 440, 545
BarI	GAAGNNNNNNTAC	2 cut(s)	97, 129
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	119, 1155
BccI	CCATC	2 cut(s)	530, 1061
BcoDI	GTCTC	1 cut(s)	1138
BfrI	CTTAAG	1 cut(s)	1085
BisI	GCNGC	3 cut(s)	133, 339, 1144
BlpI	GCTNAGC	2 cut(s)	894, 1119
BlsI	GCNGC	3 cut(s)	134, 340, 1145
BmcAI	AGTACT	1 cut(s)	773
Bme18I	GGWCC	4 cut(s)	143, 233, 440, 545
BmgT120I	GGNCC	4 cut(s)	143, 233, 440, 545
BmiI	GGNNCC	1 cut(s)	511
BmsI	GCATC	2 cut(s)	280, 403
BoxI	GACNNNNGTC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	368
Bpu1102I	GCTNAGC	2 cut(s)	894, 1119
BpuEI	CTTGAG	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	1015
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	885
BseXI	GCAGC	2 cut(s)	119, 1155
BsiHKAI	GWGCWC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	1138
BsmI	GAATGC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
Bsp1720I	GCTNAGC	2 cut(s)	894, 1119
BspACI	CCGC	5 cut(s)	20, 339, 392, 443, 814
BspCNI	CTCAG	1 cut(s)	886
BspHI	TCATGA	1 cut(s)	841
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	5 cut(s)	23, 383, 422, 547, 707
BspTI	CTTAAG	1 cut(s)	1085
BsrBI	CCGCTC	1 cut(s)	341
BssMI	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
Bst4CI	ACNGT	2 cut(s)	689, 784
BstAFI	CTTAAG	1 cut(s)	1085
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	894, 1119
BstF5I	GGATG	1 cut(s)	1015
BstHHI	GCGC	1 cut(s)	1143
BstKTI	GATC	8 cut(s)	31, 348, 378, 430, 523, 542, 715, 841
BstMAI	GTCTC	1 cut(s)	1138
BstMBI	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstNSI	RCATGY	2 cut(s)	882, 909
BstPAI	GACNNNNGTC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	119, 1155
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	1015
BtsIMutI	CAGTG	1 cut(s)	279
CciI	TCATGA	1 cut(s)	841
CfoI	GCGC	1 cut(s)	1143
Cfr13I	GGNCC	4 cut(s)	143, 233, 440, 545
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	3 cut(s)	575, 591, 772
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	7 cut(s)	188, 230, 272, 842, 879, 906, 983
CviJI	RGCY	9 cut(s)	132, 269, 338, 476, 512, 634, 946, 1118, 1146
CviKI_1	RGCY	9 cut(s)	132, 269, 338, 476, 512, 634, 946, 1118, 1146
CviQI	GTAC	3 cut(s)	575, 591, 772
DdeI	CTNAG	2 cut(s)	894, 1119
DpnI	GATC	8 cut(s)	30, 347, 377, 429, 522, 541, 714, 840
DpnII	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
DraI	TTTAAA	2 cut(s)	559, 822
Eco47I	GGWCC	4 cut(s)	143, 233, 440, 545
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	984
FaeI	CATG	7 cut(s)	191, 233, 275, 845, 882, 909, 986
FatI	CATG	7 cut(s)	187, 229, 271, 841, 878, 905, 982
Fnu4HI	GCNGC	3 cut(s)	133, 339, 1144
FokI	GGATG	1 cut(s)	1002
Fsp4HI	GCNGC	3 cut(s)	133, 339, 1144
FspI	TGCGCA	1 cut(s)	1142
GlaI	GCGC	1 cut(s)	1142
GluI	GCNGC	3 cut(s)	133, 339, 1144
GsuI	CTGGAG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	1143
Hin1II	CATG	7 cut(s)	191, 233, 275, 845, 882, 909, 986
Hin6I	GCGC	1 cut(s)	1141
HinP1I	GCGC	1 cut(s)	1141
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	4 cut(s)	311, 736, 953, 1081
HphI	GGTGA	1 cut(s)	947
Hpy166II	GTNNAC	3 cut(s)	498, 685, 995
Hpy188I	TCNGA	5 cut(s)	28, 345, 399, 741, 779
Hpy8I	GTNNAC	3 cut(s)	498, 685, 995
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	362, 612
HpyCH4III	ACNGT	2 cut(s)	689, 784
HpyCH4V	TGCA	7 cut(s)	73, 135, 187, 279, 629, 665, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	2 cut(s)	894, 1119
Hsp92II	CATG	7 cut(s)	191, 233, 275, 845, 882, 909, 986
HspAI	GCGC	1 cut(s)	1141
Kzo9I	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
LmnI	GCTCC	2 cut(s)	346, 509
LpnPI	CCDG	5 cut(s)	126, 398, 528, 729, 906
Lsp1109I	GCAGC	2 cut(s)	119, 1155
LweI	GCATC	2 cut(s)	280, 403
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	8 cut(s)	30, 347, 377, 429, 522, 541, 714, 840
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
MboII	GAAGA	3 cut(s)	117, 857, 1076
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	1090
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	627, 983
Mph1103I	ATGCAT	1 cut(s)	984
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	7 cut(s)	305, 558, 726, 786, 821, 926, 1086
MslI	CAYNNNNRTG	1 cut(s)	846
MspCI	CTTAAG	1 cut(s)	1085
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	451
NdeII	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
NlaIII	CATG	7 cut(s)	191, 233, 275, 845, 882, 909, 986
NlaIV	GGNNCC	1 cut(s)	511
NsbI	TGCGCA	1 cut(s)	1142
NsiI	ATGCAT	1 cut(s)	984
NspI	RCATGY	2 cut(s)	882, 909
PagI	TCATGA	1 cut(s)	841
PciI	ACATGT	2 cut(s)	878, 905
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	3 cut(s)	311, 736, 953
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	134, 340, 1145
PleI	GAGTC	1 cut(s)	1089
PpsI	GAGTC	1 cut(s)	1089
PpuMI	RGGWCCY	1 cut(s)	545
PscI	ACATGT	2 cut(s)	878, 905
PshAI	GACNNNNGTC	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	1074
Psp5II	RGGWCCY	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	4 cut(s)	143, 233, 440, 545
PspPPI	RGGWCCY	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	3 cut(s)	576, 592, 773
RsaNI	GTAC	3 cut(s)	575, 591, 772
RseI	CAYNNNNRTG	1 cut(s)	846
SaqAI	TTAA	7 cut(s)	305, 558, 726, 786, 821, 926, 1086
SatI	GCNGC	3 cut(s)	133, 339, 1144
Sau3AI	GATC	8 cut(s)	28, 345, 375, 427, 520, 539, 712, 838
Sau96I	GGNCC	4 cut(s)	143, 233, 440, 545
ScaI	AGTACT	1 cut(s)	773
SchI	GAGTC	1 cut(s)	1090
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	280, 403
SinI	GGWCC	4 cut(s)	143, 233, 440, 545
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	2 cut(s)	606, 1085
SmoI	CTYRAG	2 cut(s)	606, 1085
SsiI	CCGC	5 cut(s)	20, 339, 392, 443, 814
TaaI	ACNGT	2 cut(s)	689, 784
TaqI	TCGA	5 cut(s)	14, 523, 670, 711, 853
TatI	WGTACW	2 cut(s)	574, 771
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	311, 736, 953
Tru1I	TTAA	7 cut(s)	305, 558, 726, 786, 821, 926, 1086
Tru9I	TTAA	7 cut(s)	305, 558, 726, 786, 821, 926, 1086
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	132, 1143
TspDTI	ATGAA	7 cut(s)	204, 627, 672, 858, 900, 927, 1138
TspGWI	ACGGA	3 cut(s)	58, 1002, 1044
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	437
Vha464I	CTTAAG	1 cut(s)	1085
VpaK11BI	GGWCC	4 cut(s)	143, 233, 440, 545
XapI	RAATTY	5 cut(s)	623, 672, 794, 823, 1156
XceI	RCATGY	2 cut(s)	882, 909
XmnI	GAANNNNTTC	1 cut(s)	849
ZrmI	AGTACT	1 cut(s)	773
Zsp2I	ATGCAT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.