Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

52333496 .. 52335017

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG369300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTGTTCGACATGGAAGAAATAAACAATATATTGTTTTGGGTGAAAAGAGAAGTGAAGATGAACTCAGCGTTTCACAAAGTAGTCAAGAGAATTTCTCGAATATGAGGAGGAAAAGACAAAAGCAAAGAGCTGGTGATTCCACTATGGTTGAGCATTCAATTTCATCTACTGTTGTTGGTGTTACAGACGCTGTACCTGATACCGCTGCTATGCCATCATGTCCAAGGGCGCGAAAAATGTGTGTCGATTCTCAAAAAACTGTAATACATCTTATCTGTATACTTATAATCAATTATGAATACGTAATTAATAATGAGAAAAGGAACTGGTGCATACCCTTTTCTTCATTGATTTTCCTTTGTACATGTTTGAATGTGAAAAGGAATTCAGGTGTGCCAAAAATTGGATCTTTGGGAAAGTTTTGGAATTTTGTTATTGAAATTCTGAGTGGGTATTTGGAACCTTTGTTTTCTGTCAATTTGGGTGCAATCAATTTTGGCATATTGTCTAATTGGTCAGTGATGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.01

Weight (kDa)

9.25

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	283
AccII	CGCG	1 cut(s)	235
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	418
AcsI	RAATTY	4 cut(s)	94, 388, 430, 444
AfaI	GTAC	2 cut(s)	198, 367
AfiI	CCNNNNNNNGG	1 cut(s)	407
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	162, 376, 443
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	1 cut(s)	418
AlwNI	CAGNNNCTG	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	4 cut(s)	94, 388, 430, 444
AseI	ATTAAT	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	56, 149
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BsaAI	YACGTR	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	2 cut(s)	82, 440
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	410
BspACI	CCGC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	81, 441
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	410
BssNAI	GTATAC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	227
Bst1107I	GTATAC	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	175, 265
BstAUI	TGTACA	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	68, 449
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	372
BstSNI	TACGTA	1 cut(s)	307
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BstZ17I	GTATAC	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	235
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	197, 366
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	3 cut(s)	14, 222, 369
CviJI	RGCY	2 cut(s)	5, 134
CviKI_1	RGCY	2 cut(s)	5, 134
CviQI	GTAC	2 cut(s)	197, 366
DdeI	CTNAG	2 cut(s)	68, 449
DpnI	GATC	1 cut(s)	412
DpnII	GATC	1 cut(s)	410
Eco105I	TACGTA	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	3 cut(s)	17, 225, 372
FatI	CATG	3 cut(s)	13, 221, 368
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	210
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	210
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	17, 225, 372
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	2 cut(s)	140, 251
HphI	GGTGA	2 cut(s)	56, 149
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	2 cut(s)	89, 100
Hpy8I	GTNNAC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	175, 265
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	336, 491
HpyF3I	CTNAG	2 cut(s)	68, 449
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	17, 225, 372
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	410
LpnPI	CCDG	4 cut(s)	120, 213, 316, 378
Lsp1109I	GCAGC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	412
MboI	GATC	1 cut(s)	410
MboII	GAAGA	3 cut(s)	30, 71, 339
MflI	RGATCY	1 cut(s)	410
MnlI	CCTC	2 cut(s)	102, 105
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	157
MvnI	CGCG	1 cut(s)	235
NdeII	GATC	1 cut(s)	410
NlaIII	CATG	3 cut(s)	17, 225, 372
NlaIV	GGNNCC	1 cut(s)	465
NspI	RCATGY	1 cut(s)	372
PciI	ACATGT	1 cut(s)	368
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	140, 251
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	307
PscI	ACATGT	1 cut(s)	368
PshBI	ATTAAT	1 cut(s)	312
PsiI	TTATAA	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	2 cut(s)	198, 367
RsaNI	GTAC	2 cut(s)	197, 366
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	410
SetI	ASST	5 cut(s)	136, 202, 309, 397, 469
SnaBI	TACGTA	1 cut(s)	307
SsiI	CCGC	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	175, 265
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	10, 101, 249
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	140, 251
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	528
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	4 cut(s)	78, 156, 315, 339
TspRI	CASTG	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	407
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	4 cut(s)	94, 388, 430, 444
XceI	RCATGY	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.