Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Forward (+)

12127121 .. 12128395

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTTAATATGGCTGAAACCAAATGTGAAATGTTTTTGCGCATCAGATATAGACTCAATTATTTCTGCTGAATTACCTGATAAAAATTTGCATCCACAACTTTATGAAACTGTTAATCAGTTTATGATTCATGGTCCATGTGGTTGTATTAATCCAAAATCACCTTGCATGCGAGAAAATAAATGTTCTAAAAACTTTCCTAAGCCATATAAAAGCGAAACAATTTTTGACACAAATGGTTTTGCTGTTTATAAACGTCGTGAAGATGAAGAAAAATTTGTGATTAAAAACGGTATAAAAGTTGATAATAGATTTGTTGTTCCTTACAATGCAGAGTTATTACTAAAATATAATGCACATATAAATGTTGAATCCTGTTGTCAATCAATGCTTATAAAATATTTATTCAAATATGTAAATAAAGGTTCAGATAGAGCACGTTTAGTTTTTCAAGAAAATTTGAATGATGAGATTTTAGCATACCTCAATTGTAGATATATATCACCTTATGAGGCTGTTTGGAGACTATTTCAATATTTCATACATCATAGAGAGCCTTCTGTAGAGCGATTACCAGTTCATTTACCATTAGAACAAAATGTTGTTTTTACAGCTGATCAATCACTACAGTCAATCATTAATCAAAAAGCTTTTGAAAACACAATGTTAACAAGTTGGTTTGAATTGAACAAAAATTTTCCTAACGCACGTGAACTAACTTATGCACAAATTCCCACAAAATTTTTGTATGATGTAAAGAAAAAAACTTGGAAGCCAAGAAAATATAAAGCATCAATTGGCAGAATAGCATATGTACATCCTGCATCTGGCGAATTATATTATTTGAGAATGCTTTTGAATTTAAAAAAAGGCGCCATTAGTTTTGAGGATTTAAAAACAATTAATGGTGTTGTACATTCTTCCTACCATTCTGCATGCAAATCATTAGGACTATTAGGTGATGATAAAGAATGGATTGAGGCTTTATCAAGTGCTGCACATATTGCATCATCTGCTCAATTGAGACAATTGTTTGTCACAATAATTTTATTTTGTGATGTAGCAAATCCTCAAAATCTTTTTGATAGTCATTGGCAAAACATGTATGATGACATTTTATATAAATTGCGAAAAATTTTTGCAATTCCAGATATGATTGTGCCAGAACATGAATTAAAAAATTCAGTGCTATTTGAATTAGAATTACTTTTTAATAATGCATCTACCTCTTTAAAAAATATCATCTTCCCATGCCTAATGCAGAAAAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

425

Amino Acids

49.27

Weight (kDa)

8.7

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	252, 395
Acc16I	TGCGCA	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	872
AcsI	RAATTY	9 cut(s)	85, 275, 457, 694, 729, 740, 859, 1134, 1180
AcvI	CACGTG	1 cut(s)	710
AcyI	GRCGYC	1 cut(s)	873
AfaI	GTAC	2 cut(s)	816, 915
AfiI	CCNNNNNNNGG	1 cut(s)	827
AflIII	ACRYGT	1 cut(s)	1101
AluBI	AGCT	2 cut(s)	614, 650
AluI	AGCT	2 cut(s)	614, 650
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	2 cut(s)	517, 1018
ApeKI	GCWGC	1 cut(s)	995
ApoI	RAATTY	9 cut(s)	85, 275, 457, 694, 729, 740, 859, 1134, 1180
AseI	ATTAAT	3 cut(s)	150, 639, 903
AspLEI	GCGC	2 cut(s)	41, 875
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	153, 495, 971
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	872
BbrPI	CACGTG	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	982
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	2 cut(s)	517, 1018
BfmI	CTRYAG	2 cut(s)	561, 626
BfoI	RGCGCY	1 cut(s)	876
BisI	GCNGC	1 cut(s)	996
BlsI	GCNGC	1 cut(s)	997
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	874
BmsI	GCATC	6 cut(s)	50, 100, 800, 833, 1016, 1229
Bpu10I	CCTNAGC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	499
BsaHI	GRCGYC	1 cut(s)	873
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse1I	ACTGG	1 cut(s)	575
Bse8I	GATNNNNATC	1 cut(s)	499
BseGI	GGATG	2 cut(s)	91, 817
BseJI	GATNNNNATC	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseNI	ACTGG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	982
BsgI	GTGCAG	1 cut(s)	981
BshNI	GGYRCC	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	2 cut(s)	517, 1018
BsmI	GAATGC	1 cut(s)	855
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp1407I	TGTACA	2 cut(s)	814, 913
Bsp143I	GATC	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	874
BspT107I	GGYRCC	1 cut(s)	872
BsrGI	TGTACA	2 cut(s)	814, 913
BsrI	ACTGG	1 cut(s)	575
BssMI	GATC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	112, 293, 630
BstACI	GRCGYC	1 cut(s)	873
BstAPI	GCANNNNNTGC	2 cut(s)	1004, 1013
BstAUI	TGTACA	2 cut(s)	814, 913
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	170, 937
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	91, 817
BstH2I	RGCGCY	1 cut(s)	876
BstHHI	GCGC	2 cut(s)	41, 875
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	2 cut(s)	517, 1018
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	2 cut(s)	1004, 1013
BstNSI	RCATGY	3 cut(s)	172, 939, 1105
BstSFI	CTRYAG	2 cut(s)	561, 626
BstV1I	GCAGC	1 cut(s)	982
BtsCI	GGATG	2 cut(s)	91, 817
BtsIMutI	CAGTG	1 cut(s)	1191
Cac8I	GCNNGC	2 cut(s)	170, 937
CfoI	GCGC	2 cut(s)	41, 875
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	815, 914
CviAII	CATG	7 cut(s)	131, 138, 169, 936, 1102, 1169, 1251
CviJI	RGCY	8 cut(s)	13, 205, 515, 556, 614, 650, 775, 983
CviKI_1	RGCY	8 cut(s)	13, 205, 515, 556, 614, 650, 775, 983
CviQI	GTAC	2 cut(s)	815, 914
DdeI	CTNAG	1 cut(s)	201
DinI	GGCGCC	1 cut(s)	874
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DraI	TTTAAA	3 cut(s)	864, 894, 1233
Eco47I	GGWCC	1 cut(s)	134
Eco72I	CACGTG	1 cut(s)	710
EcoT22I	ATGCAT	1 cut(s)	1222
EgeI	GGCGCC	1 cut(s)	874
EheI	GGCGCC	1 cut(s)	874
FaeI	CATG	7 cut(s)	134, 141, 172, 939, 1105, 1172, 1254
FatI	CATG	7 cut(s)	130, 137, 168, 935, 1101, 1168, 1250
FauNDI	CATATG	1 cut(s)	811
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	1 cut(s)	996
FokI	GGATG	2 cut(s)	78, 804
Fsp4HI	GCNGC	1 cut(s)	996
FspI	TGCGCA	1 cut(s)	40
GlaI	GCGC	2 cut(s)	40, 874
GluI	GCNGC	1 cut(s)	996
HaeII	RGCGCY	1 cut(s)	876
HhaI	GCGC	2 cut(s)	41, 875
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	7 cut(s)	134, 141, 172, 939, 1105, 1172, 1254
Hin6I	GCGC	2 cut(s)	39, 873
HinP1I	GCGC	2 cut(s)	39, 873
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	3 cut(s)	53, 127, 371
HpaI	GTTAAC	1 cut(s)	669
HphI	GGTGA	3 cut(s)	153, 495, 971
Hpy166II	GTNNAC	2 cut(s)	669, 713
Hpy188I	TCNGA	2 cut(s)	46, 430
Hpy188III	TCNNGA	3 cut(s)	260, 452, 1148
Hpy8I	GTNNAC	2 cut(s)	669, 713
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	3 cut(s)	112, 293, 630
HpyCH4IV	ACGT	3 cut(s)	256, 439, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1004, 1013
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	3 cut(s)	256, 439, 709
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	7 cut(s)	134, 141, 172, 939, 1105, 1172, 1254
HspAI	GCGC	2 cut(s)	39, 873
KasI	GGCGCC	1 cut(s)	872
Ksp22I	TGATCA	1 cut(s)	616
KspAI	GTTAAC	1 cut(s)	669
Kzo9I	GATC	1 cut(s)	616
LpnPI	CCDG	7 cut(s)	90, 388, 588, 813, 834, 1161, 1176
Lsp1109I	GCAGC	1 cut(s)	982
LweI	GCATC	6 cut(s)	50, 100, 800, 833, 1016, 1229
MaeII	ACGT	3 cut(s)	256, 439, 709
MaeIII	GTNAC	1 cut(s)	1036
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	4 cut(s)	275, 281, 912, 1237
MfeI	CAATTG	4 cut(s)	487, 795, 1019, 1028
MhlI	GDGCHC	1 cut(s)	439
Mly113I	GGCGCC	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	494, 505, 880, 973, 1080, 1237
Mph1103I	ATGCAT	1 cut(s)	1222
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	614
MunI	CAATTG	4 cut(s)	487, 795, 1019, 1028
Mva1269I	GAATGC	1 cut(s)	855
MwoI	GCNNNNNNNGC	2 cut(s)	1004, 1013
NarI	GGCGCC	1 cut(s)	873
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	7 cut(s)	134, 141, 172, 939, 1105, 1172, 1254
NlaIV	GGNNCC	1 cut(s)	874
NmuCI	GTSAC	1 cut(s)	1036
NsbI	TGCGCA	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	1222
NspI	RCATGY	3 cut(s)	172, 939, 1105
PaeI	GCATGC	2 cut(s)	172, 939
PciI	ACATGT	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	127, 371
PkrI	GCNGC	1 cut(s)	997
PleI	GAGTC	1 cut(s)	47
PluTI	GGCGCC	1 cut(s)	876
PmaCI	CACGTG	1 cut(s)	710
PmlI	CACGTG	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	710
PscI	ACATGT	1 cut(s)	1101
PshBI	ATTAAT	3 cut(s)	150, 639, 903
PsiI	TTATAA	2 cut(s)	252, 395
PspCI	CACGTG	1 cut(s)	710
PspN4I	GGNNCC	1 cut(s)	874
PspPI	GGNCC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	2 cut(s)	816, 915
RsaNI	GTAC	2 cut(s)	815, 914
RseI	CAYNNNNRTG	1 cut(s)	363
SatI	GCNGC	1 cut(s)	996
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	6 cut(s)	50, 100, 800, 833, 1016, 1229
SfcI	CTRYAG	2 cut(s)	561, 626
SfoI	GGCGCC	1 cut(s)	874
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	363
SphI	GCATGC	2 cut(s)	172, 939
SspDI	GGCGCC	1 cut(s)	872
SspI	AATATT	2 cut(s)	401, 536
TaaI	ACNGT	3 cut(s)	112, 293, 630
TaiI	ACGT	3 cut(s)	259, 442, 712
TatI	WGTACW	2 cut(s)	814, 913
TfiI	GAWTC	2 cut(s)	127, 371
TscAI	CASTG	1 cut(s)	1191
TseFI	GTSAC	1 cut(s)	1036
TseI	GCWGC	1 cut(s)	995
Tsp45I	GTSAC	1 cut(s)	1036
TspDTI	ATGAA	6 cut(s)	119, 120, 282, 529, 569, 1185
TspRI	CASTG	1 cut(s)	1191
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	3 cut(s)	150, 639, 903
XapI	RAATTY	9 cut(s)	85, 275, 457, 694, 729, 740, 859, 1134, 1180
XceI	RCATGY	3 cut(s)	172, 939, 1105
Zsp2I	ATGCAT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.