Rh1CG246000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001547
Physical Location & Seq
Reverse (-)
50731241 .. 50734682
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG246000.1

Sequence Viewer

Length: 432 bp
ATGAGGAGGAAAAGACAAAAGCAAAGAGCTGGTGATTCCACTATGGTTGAGCATTCAATTTCATCTACTGTTGTTGGTGTTACAGACGCTGTACCTGATACCGCTGCTATGCCATCATATCCAAGGGTGCCAAAAATGCGTGTCGATTGTCAAAAAACTGTATTACATCTTATTTGTATACTTATAATCAATTATGAATACGTAATTAATAATGAGAAAAGGAACTGGTACATACCGTTTTCTTCATTGATTTTCCTTTGTACGTGTTTGAATGTGAAAAGGAATTCAGGTGTGCCAAAAATTGGATCTTTGGGAAAGTTTTGGAATTTTGTTATTGAAATTCTGAGTGGGTATTTGGAACCTCTGTTTTCTGTCAATTTGGGTGCAATCAATTTTGACATATTGTCTTATTGGTCAGTGATGAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.26

Weight (kDa)

9.3

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 302
AccI GTMKAC 1 cut(s) 178
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 313
AcsI RAATTY 3 cut(s) 283, 325, 339
AfaI GTAC 3 cut(s) 93, 230, 262
AfiI CCNNNNNNNGG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 3 cut(s) 57, 271, 338
AhdI GACNNNNNGTC 1 cut(s) 403
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AlwI GGATC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 3 cut(s) 283, 325, 339
AseI ATTAAT 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 121
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmeRI GACNNNNNGTC 1 cut(s) 403
BmiI GGNNCC 2 cut(s) 129, 360
BsaAI YACGTR 2 cut(s) 202, 264
BsaJI CCNNGG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 302
BsmI GAATGC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 305
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 129, 360
BspPI GGATC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 305
BssNAI GTATAC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 122
Bst1107I GTATAC 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 70, 160, 237
BstBAI YACGTR 2 cut(s) 202, 264
BstDEI CTNAG 1 cut(s) 344
BstKTI GATC 1 cut(s) 308
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstSNI TACGTA 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BstZ17I GTATAC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 89
CseI GACGC 1 cut(s) 95
Csp6I GTAC 3 cut(s) 92, 229, 261
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviJI RGCY 1 cut(s) 29
CviKI_1 RGCY 1 cut(s) 29
CviQI GTAC 3 cut(s) 92, 229, 261
DdeI CTNAG 1 cut(s) 344
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
DriI GACNNNNNGTC 1 cut(s) 403
Eam1105I GACNNNNNGTC 1 cut(s) 403
Eco105I TACGTA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaiI YATR 8 cut(s) 44, 110, 118, 179, 185, 195, 233, 401
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HgaI GACGC 1 cut(s) 95
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 345
Hpy8I GTNNAC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 70, 160, 237
HpyCH4IV ACGT 2 cut(s) 201, 263
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 2 cut(s) 201, 263
Kzo9I GATC 1 cut(s) 305
LpnPI CCDG 4 cut(s) 15, 108, 211, 273
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 2 cut(s) 201, 263
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 1 cut(s) 234
MflI RGATCY 1 cut(s) 305
MluCI AATT 9 cut(s) 57, 190, 204, 283, 300, 325, 339, 376, 391
MnlI CCTC 1 cut(s) 372
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeII GATC 1 cut(s) 305
NlaIV GGNNCC 2 cut(s) 129, 360
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 1 cut(s) 106
Ppu21I YACGTR 2 cut(s) 202, 264
PshBI ATTAAT 1 cut(s) 207
PsiI TTATAA 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 129, 360
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 3 cut(s) 93, 230, 262
RsaNI GTAC 3 cut(s) 92, 229, 261
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 305
SetI ASST 6 cut(s) 31, 97, 204, 266, 292, 364
SgeI CNNG 7 cut(s) 42, 107, 135, 152, 238, 276, 300
SnaBI TACGTA 1 cut(s) 202
Sse9I AATT 9 cut(s) 57, 190, 204, 283, 300, 325, 339, 376, 391
SsiI CCGC 1 cut(s) 102
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 70, 160, 237
TaiI ACGT 2 cut(s) 204, 266
TaqI TCGA 1 cut(s) 144
TasI AATT 9 cut(s) 57, 190, 204, 283, 300, 325, 339, 376, 391
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 423
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 51, 210, 234
TspRI CASTG 1 cut(s) 423
Van91I CCANNNNNTGG 1 cut(s) 302
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 3 cut(s) 283, 325, 339
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.