Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002236.1

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Forward (+)

46564 .. 51333

Gene Structure 4770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002236.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgggtaattggattgcccgacgtggagagaaagagaagtgcgccgatcaagtcttccacaagcggaaggagtttctagatctgaggaacagtgtgctgtcaacttctttagctctttcggcttcagatataaatatttcagaaatggcggttcgacatggaagaaataaacaatatattgttttgggtgaaaagagaagtgaagatgaactctgcgtttcacaaagtagtcgagagaatttctcgaatatgaggagaaaaagacaaaagcaaagagctggtgattccactatggtcgagcattcaatttcatctactgttgttggtgttacagacgctgtacctgataccgctgctatgccatcatgtccaagagcacgaaaaatgcgtgtcgattctcaaaaaactgtttcaactgtagcaaccattggtcaagcatcatatcaaagaagtaggagtggaatttgtccaagttatgcagattttggagataaaattttcgaatgtcgttattgcaacgcattattttggttaaatgaatctacaaaagtgacgcatcaaaatcaatctccgactttcacattatgttgtcagcatggcagagtaacacttccatcagcacgtccaacaccaaaatttcttgatgaattattagacccaacaaaaggacatagaagtttactgttcagacaaaatattcggatttacaattccatgttttgttttacttcaatgggagcaaaaattgaacgcactattaatgatggttccggtccttatgtttttaaaattagtggtcaagttcatcacttaatgggatctttgttacctcccgaaaatgaatctccaaaatatgcgcaactatatgtatatgatactcaacatgaggtaacaaatcggatcagagctattgacagtgatgaatcaaatgataagcttgatccaagtattgttcatcaattgatcacaatgtttgacgatgtgaatgaattggttaaactttttcgaaccaaaagaaatgaatttgaaaatgcttctttgccgacatttcgtatgactatgctcgatcggcaattaactgacagcagacaatatgaacagcctgcatgtaatgaaattagtggtttgatcgttggtgatataggcctttctaattcaaatagagatattgtagtccaattaaaagatgaacgcttacaacgtgtctcaaagttacattcaaaatatatgtcactacaatatccaatcctttttccatatggcgaagatggttatagtccagatttaaaaatgcaagcccctgaaggacgcagtcagcaaaatacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N REPA_OB_2

Protein Analysis

442

Amino Acids

50.31

Weight (kDa)

8.79

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	858
AciI	CCGC	3 cut(s)	64, 149, 351
AclWI	GGATC	3 cut(s)	826, 908, 935
AcsI	RAATTY	5 cut(s)	238, 462, 495, 635, 1022
AcuI	CTGAAG	2 cut(s)	108, 1323
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	665
AflIII	ACRYGT	1 cut(s)	1201
AgsI	TTSAA	7 cut(s)	306, 414, 732, 749, 1028, 1158, 1221
AjiI	CACGTC	2 cut(s)	23, 623
AluBI	AGCT	4 cut(s)	113, 278, 908, 937
AluI	AGCT	4 cut(s)	113, 278, 908, 937
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	1210
AlwI	GGATC	3 cut(s)	826, 908, 935
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	1144
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	5 cut(s)	238, 462, 495, 635, 1022
ArsI	GACNNNNNNTTYG	4 cut(s)	681, 713, 1214, 1246
AseI	ATTAAT	1 cut(s)	759
AspLEI	GCGC	2 cut(s)	44, 859
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	3 cut(s)	200, 293, 1148
AsuII	TTCGAA	2 cut(s)	501, 1006
AvaII	GGWCC	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	4 cut(s)	370, 622, 758, 1262
BclI	TGATCA	1 cut(s)	963
BcoDI	GTCTC	1 cut(s)	1210
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	417
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	773
BmgBI	CACGTC	2 cut(s)	23, 623
BmgT120I	GGNCC	1 cut(s)	773
BmiI	GGNNCC	1 cut(s)	769
BmsI	GCATC	2 cut(s)	446, 565
BpiI	GAAGAC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu14I	TTCGAA	2 cut(s)	501, 1006
BsaAI	YACGTR	1 cut(s)	1326
BsaWI	WCCGGW	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	1069
BshFI	GGCC	1 cut(s)	1146
BsiEI	CGRYCG	1 cut(s)	1069
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	771
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	1210
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	1146
Bsp119I	TTCGAA	2 cut(s)	501, 1006
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
BspACI	CCGC	3 cut(s)	64, 149, 351
BspANI	GGCC	1 cut(s)	1146
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	769
BspPI	GGATC	3 cut(s)	826, 908, 935
BspT104I	TTCGAA	2 cut(s)	501, 1006
BssMI	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
Bst4CI	ACNGT	6 cut(s)	92, 319, 409, 418, 684, 917
BstBAI	YACGTR	1 cut(s)	1326
BstBI	TTCGAA	2 cut(s)	501, 1006
BstC8I	GCNNGC	2 cut(s)	1104, 1296
BstDEI	CTNAG	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	44, 859
BstKTI	GATC	8 cut(s)	49, 82, 821, 903, 943, 966, 1069, 1131
BstMAI	GTCTC	1 cut(s)	1210
BstMBI	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
BstMCI	CGRYCG	1 cut(s)	1069
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 1069
BstNSI	RCATGY	1 cut(s)	1110
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	79, 818
BstYI	RGATCY	2 cut(s)	79, 818
BsuRI	GGCC	1 cut(s)	1146
BtrI	CACGTC	2 cut(s)	23, 623
BtsIMutI	CAGTG	2 cut(s)	97, 922
Cac8I	GCNNGC	2 cut(s)	1104, 1296
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	2 cut(s)	44, 859
Cfr13I	GGNCC	1 cut(s)	773
CseI	GACGC	3 cut(s)	344, 562, 1317
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	6 cut(s)	158, 366, 596, 715, 884, 1107
CviJI	RGCY	8 cut(s)	113, 122, 278, 908, 937, 1102, 1146, 1298
CviKI_1	RGCY	8 cut(s)	113, 122, 278, 908, 937, 1102, 1146, 1298
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	8 cut(s)	48, 81, 820, 902, 942, 965, 1068, 1130
DpnII	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
DraI	TTTAAA	2 cut(s)	787, 1287
Eco147I	AGGCCT	1 cut(s)	1146
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	108, 1323
FaeI	CATG	6 cut(s)	161, 369, 599, 718, 887, 1110
FatI	CATG	6 cut(s)	157, 365, 595, 714, 883, 1106
FauNDI	CATATG	1 cut(s)	1258
FbaI	TGATCA	1 cut(s)	963
Fnu4HI	GCNGC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	77
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	2 cut(s)	43, 858
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	1146
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	3 cut(s)	344, 562, 1317
HhaI	GCGC	2 cut(s)	44, 859
Hin1II	CATG	6 cut(s)	161, 369, 599, 718, 887, 1110
Hin6I	GCGC	2 cut(s)	42, 857
HinP1I	GCGC	2 cut(s)	42, 857
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	5 cut(s)	284, 395, 539, 842, 923
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	3 cut(s)	200, 293, 1148
Hpy166II	GTNNAC	2 cut(s)	102, 680
Hpy188I	TCNGA	8 cut(s)	84, 127, 142, 573, 689, 702, 900, 905
Hpy188III	TCNNGA	6 cut(s)	77, 233, 244, 641, 833, 1280
Hpy8I	GTNNAC	2 cut(s)	102, 680
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	61, 1298
HpyCH4III	ACNGT	6 cut(s)	92, 319, 409, 418, 684, 917
HpyCH4IV	ACGT	4 cut(s)	22, 622, 1201, 1325
HpyCH4V	TGCA	4 cut(s)	479, 516, 1106, 1294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 1069
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	4 cut(s)	22, 622, 1201, 1325
Hsp92II	CATG	6 cut(s)	161, 369, 599, 718, 887, 1110
HspAI	GCGC	2 cut(s)	42, 857
Ksp22I	TGATCA	1 cut(s)	963
Kzo9I	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
LmnI	GCTCC	1 cut(s)	737
LpnPI	CCDG	6 cut(s)	264, 357, 784, 1116, 1293, 1314
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	446, 565
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	4 cut(s)	22, 622, 1201, 1325
MaeIII	GTNAC	7 cut(s)	328, 550, 604, 825, 889, 1212, 1230
MalI	GATC	8 cut(s)	48, 81, 820, 902, 942, 965, 1068, 1130
MboI	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
MboII	GAAGA	4 cut(s)	46, 174, 215, 1277
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	2 cut(s)	79, 818
MhlI	GDGCHC	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	596, 650
MnlI	CCTC	4 cut(s)	78, 246, 840, 880
MseI	TTAA	8 cut(s)	533, 759, 786, 812, 996, 1076, 1181, 1286
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	771
MunI	CAATTG	1 cut(s)	959
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	119, 1069
NdeI	CATATG	1 cut(s)	1258
NdeII	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
NlaIII	CATG	6 cut(s)	161, 369, 599, 718, 887, 1110
NlaIV	GGNNCC	1 cut(s)	769
NmuCI	GTSAC	2 cut(s)	550, 1230
NsbI	TGCGCA	1 cut(s)	858
NspI	RCATGY	1 cut(s)	1110
NspV	TTCGAA	2 cut(s)	501, 1006
PceI	AGGCCT	1 cut(s)	1146
PcsI	WCGNNNNNNNCGW	2 cut(s)	385, 1198
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	5 cut(s)	284, 395, 539, 842, 923
PflFI	GACNNNGTC	1 cut(s)	1311
PkrI	GCNGC	1 cut(s)	355
Ple19I	CGATCG	1 cut(s)	1069
Ppu21I	YACGTR	1 cut(s)	1326
PshBI	ATTAAT	1 cut(s)	759
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	1 cut(s)	773
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	79, 818
PsyI	GACNNNGTC	1 cut(s)	1311
PvuI	CGATCG	1 cut(s)	1069
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	8 cut(s)	533, 759, 786, 812, 996, 1076, 1181, 1286
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	8 cut(s)	46, 79, 818, 900, 940, 963, 1066, 1128
Sau96I	GGNCC	1 cut(s)	773
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	2 cut(s)	446, 565
SfcI	CTRYAG	1 cut(s)	417
SfuI	TTCGAA	2 cut(s)	501, 1006
SinI	GGWCC	1 cut(s)	773
SseBI	AGGCCT	1 cut(s)	1146
SsiI	CCGC	3 cut(s)	64, 149, 351
SspI	AATATT	2 cut(s)	136, 697
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	1146
TaaI	ACNGT	6 cut(s)	92, 319, 409, 418, 684, 917
TaiI	ACGT	4 cut(s)	25, 625, 1204, 1328
TaqI	TCGA	8 cut(s)	154, 232, 245, 297, 393, 501, 1006, 1065
TfiI	GAWTC	5 cut(s)	284, 395, 539, 842, 923
Tru1I	TTAA	8 cut(s)	533, 759, 786, 812, 996, 1076, 1181, 1286
Tru9I	TTAA	8 cut(s)	533, 759, 786, 812, 996, 1076, 1181, 1286
TscAI	CASTG	2 cut(s)	97, 922
TseFI	GTSAC	2 cut(s)	550, 1230
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	550, 1230
TspRI	CASTG	2 cut(s)	97, 922
Tth111I	GACNNNGTC	1 cut(s)	1311
VpaK11BI	GGWCC	1 cut(s)	773
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	5 cut(s)	238, 462, 495, 635, 1022
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	1110
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.