Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

19763521 .. 19765577

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G200900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGTGGAAACCTAGAAAAAAAAAAGGATCCCTTGGTAGAATAGCTTATGTACATCCTGCATCTGGTGAATTCTATTATTTAAGAATGCTTTTGAATTTGCAAAAAGGGGCTTTTCACTTTAATGACCTAAAAACTGTTAATGGTATTATAGAACCATCATACCAAGCTGCATGTAAATCCCTAGGTTTGTTAAGAGATGATAAAGAATGGATTGAAGCCTTAGCAAATGCTGTAAACACAGCCACATGTCCTCAATTAAGGCAATTATTTGTCACAATCATTTTATTTTGTGATGTAGGAAATCCTCAAATTCTTTTTGACACTTATTGGCAAAATATGTCTGAGGACATTTTACACAAATTACGACAAACTTTCGGAATGCCAAATCTAATTGTATCAGAATCTGAATTAAAAAATTCTCTTTTATTTGAATTAGAACAGCTTTTCAATGTATCTTCCAGCTCTTTAAAGGAGCATCACCTTCCTATGCCTGATGAATATAGAATGTTAGAACTTAGAAATAAATTGCTTAGAGAAGAATTAAATTACAATTATAATAATTTAGAAAAAGAACACTCCATTTTAGTTACACAACTTAACAAAGGTCAAAAAGATGTATATGATTGTGTTATAAAAACTATTGAAGAAAAAATGTCAGGCCTCTTTTTTGTCCACGGTCATGGAGGAACAGGAAAAACTTTTTTGTGGCATACTATAATAACTCACTCTAGATTTAAAATTCCCTTAATTGTTAACAATTGCTCAACATGTCGAATAAAAAAAGGAACTCATCTTGCCAAATTAATTGAAAAAGCCGCTTTAATTGTTTGGGACGAAGCTCCTATGAATCACAAACATTGTTTTGAAGCATTAGATAAATCACTTTCTGATATTTTATCACATTTAAATCCTTTAGATAACAATGTTCCATTTGGTGGGAAACCTTTATTGTTAGGTGGTGATTTCAGACAAATATTACCAGTTATTCCAGGAGGAACAAGAGAAGAAATAATAGATGCCTCTCCCAATAGCTCTTATTTATGGCCTTTTTTTAAAATATTCCATTTAAAAGAAAATATGAGACTCTCGAAAAATGGATTAAACATTGAAGAAAAACAAAAAATAAATGATTTTGCTGCATGGATTTTGCGCATCGCAACATACCCAAATTTTGAAAGAAATTTCAACAATTTTACTTATTTAAGAGAACGAGTTATTGTAACACCTCGAAACACAACTGTAACTGAAATAAATAACTATGCAATTGATTTATTACCTGGACAAGAACTTATTACACAATTGTATGATAAAATTATCGAAGCAAAAATACTTGCTGGTAGTAACATTGGTCACATAGTTTTCATACCTCGAATAAGCCTTACAGCAACTGAAAACAAATGGCCTTTCATTTTTAAAAGGCGCCAATTCCCAATTAGACCATGTTATGCAATGACAATAAATAAAAGTCAAGGCCAATCATTGAAACAAGTTGGACTATATCTTTCTCAACTTGTATTCACTCATGGACAACTTTATGTTGCATTATCCAGGGTTACATCAAGACAAGGTCTTAAAATCCTAATAGAAAATAATAAAGAAGTACCAAATAATTACACTAAAAACATAGTGTATAAAGATGTTCTTCAAAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

552

Amino Acids

63.48

Weight (kDa)

9.14

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	555, 632, 1654
Acc16I	TGCGCA	1 cut(s)	1151
AccB1I	GGYRCC	1 cut(s)	1419
AccB7I	CCANNNNNTGG	1 cut(s)	935
AciI	CCGC	1 cut(s)	816
AclWI	GGATC	2 cut(s)	21, 34
AcsI	RAATTY	8 cut(s)	68, 94, 309, 415, 738, 1168, 1180, 1648
AcyI	GRCGYC	1 cut(s)	1420
AfaI	GTAC	2 cut(s)	51, 1602
AfiI	CCNNNNNNNGG	2 cut(s)	62, 935
AflIII	ACRYGT	2 cut(s)	245, 767
AjnI	CCWGG	3 cut(s)	988, 1276, 1547
AluBI	AGCT	6 cut(s)	44, 167, 442, 462, 839, 1032
AluI	AGCT	6 cut(s)	44, 167, 442, 462, 839, 1032
Alw26I	GTCTC	1 cut(s)	1075
AlwI	GGATC	2 cut(s)	21, 34
AlwNI	CAGNNNCTG	2 cut(s)	404, 1388
AoxI	GGCC	4 cut(s)	658, 1043, 1400, 1471
ApeKI	GCWGC	2 cut(s)	167, 1136
ApoI	RAATTY	8 cut(s)	68, 94, 309, 415, 738, 1168, 1180, 1648
AseI	ATTAAT	1 cut(s)	803
AspA2I	CCTAGG	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	1152, 1422
AsuHPI	GGTGA	3 cut(s)	77, 470, 971
AvrII	CCTAGG	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	1419
BarI	GAAGNNNNNNTAC	2 cut(s)	1311, 1343
BbvI	GCAGC	2 cut(s)	154, 1123
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	3 cut(s)	990, 1278, 1549
BcoDI	GTCTC	1 cut(s)	1075
BfaI	CTAG	3 cut(s)	12, 182, 729
BfoI	RGCGCY	1 cut(s)	1423
BisI	GCNGC	3 cut(s)	168, 816, 1137
BlnI	CCTAGG	1 cut(s)	181
BlsI	GCNGC	3 cut(s)	169, 817, 1138
Bme1390I	CCNGG	3 cut(s)	990, 1278, 1549
BmiI	GGNNCC	2 cut(s)	28, 1421
BmrFI	CCNGG	3 cut(s)	990, 1278, 1549
BmsI	GCATC	4 cut(s)	68, 484, 1006, 1161
Bpu10I	CCTNAGC	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	1420
BsaJI	CCNNGG	4 cut(s)	31, 181, 673, 1548
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 935
Bse1I	ACTGG	1 cut(s)	980
Bse3DI	GCAATG	1 cut(s)	1455
BseBI	CCWGG	3 cut(s)	990, 1278, 1549
BseDI	CCNNGG	4 cut(s)	31, 181, 673, 1548
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	62, 935
BseMI	GCAATG	1 cut(s)	1455
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	980
BseXI	GCAGC	2 cut(s)	154, 1123
BshFI	GGCC	4 cut(s)	660, 1045, 1402, 1473
BshNI	GGYRCC	1 cut(s)	1419
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	2 cut(s)	62, 935
BsmAI	GTCTC	1 cut(s)	1075
BsmFI	GGGAC	1 cut(s)	845
BsmI	GAATGC	2 cut(s)	90, 384
BsnI	GGCC	4 cut(s)	660, 1045, 1402, 1473
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	816
BspANI	GGCC	4 cut(s)	660, 1045, 1402, 1473
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	28, 1421
BspPI	GGATC	2 cut(s)	21, 34
BspT107I	GGYRCC	1 cut(s)	1419
BsrDI	GCAATG	1 cut(s)	1455
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	980
BssECI	CCNNGG	4 cut(s)	31, 181, 673, 1548
BssMI	GATC	1 cut(s)	26
BssNI	GRCGYC	1 cut(s)	1420
BssT1I	CCWWGG	2 cut(s)	31, 181
Bst2UI	CCWGG	3 cut(s)	990, 1278, 1549
Bst4CI	ACNGT	3 cut(s)	136, 677, 1240
BstACI	GRCGYC	1 cut(s)	1420
BstAUI	TGTACA	1 cut(s)	49
BstDEI	CTNAG	4 cut(s)	220, 342, 515, 530
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	1423
BstHHI	GCGC	2 cut(s)	1152, 1422
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	1 cut(s)	26
BstNI	CCWGG	3 cut(s)	990, 1278, 1549
BstNSI	RCATGY	3 cut(s)	174, 249, 771
BstSCI	CCNGG	3 cut(s)	988, 1276, 1547
BstV1I	GCAGC	2 cut(s)	154, 1123
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	4 cut(s)	660, 1045, 1402, 1473
BtgI	CCRYGG	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	1138
BtsCI	GGATG	1 cut(s)	52
CaiI	CAGNNNCTG	2 cut(s)	404, 1388
CfoI	GCGC	2 cut(s)	1152, 1422
Csp6I	GTAC	2 cut(s)	50, 1601
CviAII	CATG	7 cut(s)	171, 246, 680, 768, 1140, 1440, 1523
CviQI	GTAC	2 cut(s)	50, 1601
DdeI	CTNAG	4 cut(s)	220, 342, 515, 530
DinI	GGCGCC	1 cut(s)	1421
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
DraI	TTTAAA	6 cut(s)	468, 736, 906, 1054, 1068, 1414
Eco130I	CCWWGG	2 cut(s)	31, 181
Eco147I	AGGCCT	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	3 cut(s)	988, 1276, 1547
EcoT14I	CCWWGG	2 cut(s)	31, 181
EgeI	GGCGCC	1 cut(s)	1421
EheI	GGCGCC	1 cut(s)	1421
ErhI	CCWWGG	2 cut(s)	31, 181
FaeI	CATG	7 cut(s)	174, 249, 683, 771, 1143, 1443, 1526
FalI	AAGNNNNNCTT	3 cut(s)	15, 47, 1626
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	7 cut(s)	170, 245, 679, 767, 1139, 1439, 1522
Fnu4HI	GCNGC	3 cut(s)	168, 816, 1137
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	168, 816, 1137
FspBI	CTAG	3 cut(s)	12, 182, 729
FspI	TGCGCA	1 cut(s)	1151
GlaI	GCGC	2 cut(s)	1151, 1421
GluI	GCNGC	3 cut(s)	168, 816, 1137
HaeII	RGCGCY	1 cut(s)	1423
HaeIII	GGCC	4 cut(s)	660, 1045, 1402, 1473
HhaI	GCGC	2 cut(s)	1152, 1422
Hin1I	GRCGYC	1 cut(s)	1420
Hin1II	CATG	7 cut(s)	174, 249, 683, 771, 1143, 1443, 1526
Hin6I	GCGC	2 cut(s)	1150, 1420
HinP1I	GCGC	2 cut(s)	1150, 1420
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	3 cut(s)	401, 847, 1083
HpaI	GTTAAC	1 cut(s)	754
HphI	GGTGA	3 cut(s)	77, 470, 971
Hpy166II	GTNNAC	3 cut(s)	235, 673, 754
Hpy188I	TCNGA	6 cut(s)	343, 377, 400, 406, 889, 968
Hpy188III	TCNNGA	3 cut(s)	729, 1087, 1560
Hpy8I	GTNNAC	3 cut(s)	235, 673, 754
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	3 cut(s)	136, 677, 1240
HpyCH4V	TGCA	7 cut(s)	59, 100, 170, 1139, 1262, 1448, 1541
HpyF3I	CTNAG	4 cut(s)	220, 342, 515, 530
Hsp92I	GRCGYC	1 cut(s)	1420
Hsp92II	CATG	7 cut(s)	174, 249, 683, 771, 1143, 1443, 1526
HspAI	GCGC	2 cut(s)	1150, 1420
KasI	GGCGCC	1 cut(s)	1419
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	472, 844
Lsp1109I	GCAGC	2 cut(s)	154, 1123
LweI	GCATC	4 cut(s)	68, 484, 1006, 1161
MaeI	CTAG	3 cut(s)	12, 182, 729
MaeIII	GTNAC	7 cut(s)	271, 586, 1219, 1240, 1340, 1349, 1552
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	6 cut(s)	447, 548, 656, 1016, 1121, 1634
MfeI	CAATTG	3 cut(s)	757, 1263, 1298
MflI	RGATCY	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	1420
MlyI	GAGTC	1 cut(s)	1077
MmeI	TCCRAC	1 cut(s)	1471
MnlI	CCTC	9 cut(s)	261, 315, 337, 671, 677, 986, 1030, 1236, 1377
MslI	CAYNNNNRTG	2 cut(s)	120, 678
MspR9I	CCNGG	3 cut(s)	990, 1278, 1549
MunI	CAATTG	3 cut(s)	757, 1263, 1298
Mva1269I	GAATGC	2 cut(s)	90, 384
MvaI	CCWGG	3 cut(s)	990, 1278, 1549
NarI	GGCGCC	1 cut(s)	1420
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	7 cut(s)	174, 249, 683, 771, 1143, 1443, 1526
NlaIV	GGNNCC	2 cut(s)	28, 1421
NmuCI	GTSAC	2 cut(s)	271, 1349
NsbI	TGCGCA	1 cut(s)	1151
NspI	RCATGY	3 cut(s)	174, 249, 771
PceI	AGGCCT	1 cut(s)	660
PciI	ACATGT	2 cut(s)	245, 767
PctI	GAATGC	2 cut(s)	90, 384
PfeI	GAWTC	2 cut(s)	401, 847
PflFI	GACNNNGTC	1 cut(s)	1566
PflMI	CCANNNNNTGG	1 cut(s)	935
PfoI	TCCNGGA	1 cut(s)	988
PkrI	GCNGC	3 cut(s)	169, 817, 1138
PleI	GAGTC	1 cut(s)	1077
PluTI	GGCGCC	1 cut(s)	1423
PpsI	GAGTC	1 cut(s)	1077
PscI	ACATGT	2 cut(s)	245, 767
PshBI	ATTAAT	1 cut(s)	803
PsiI	TTATAA	3 cut(s)	555, 632, 1654
Psp6I	CCWGG	3 cut(s)	988, 1276, 1547
PspGI	CCWGG	3 cut(s)	988, 1276, 1547
PspN4I	GGNNCC	2 cut(s)	28, 1421
PstNI	CAGNNNCTG	2 cut(s)	404, 1388
PsuI	RGATCY	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	1566
RsaI	GTAC	2 cut(s)	51, 1602
RsaNI	GTAC	2 cut(s)	50, 1601
RseI	CAYNNNNRTG	2 cut(s)	120, 678
SatI	GCNGC	3 cut(s)	168, 816, 1137
Sau3AI	GATC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	1077
ScrFI	CCNGG	3 cut(s)	990, 1278, 1549
SfaNI	GCATC	4 cut(s)	68, 484, 1006, 1161
SfoI	GGCGCC	1 cut(s)	1421
SmiI	ATTTAAAT	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	120, 678
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	1 cut(s)	816
SspDI	GGCGCC	1 cut(s)	1419
SspI	AATATT	2 cut(s)	975, 1059
SspMI	CTAG	3 cut(s)	12, 182, 729
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	988, 1276, 1547
StyI	CCWWGG	2 cut(s)	31, 181
SwaI	ATTTAAAT	1 cut(s)	906
TaaI	ACNGT	3 cut(s)	136, 677, 1240
TaqI	TCGA	5 cut(s)	772, 1088, 1228, 1317, 1369
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	2 cut(s)	401, 847
TseFI	GTSAC	2 cut(s)	271, 1349
TseI	GCWGC	2 cut(s)	167, 1136
Tsp45I	GTSAC	2 cut(s)	271, 1349
TspDTI	ATGAA	4 cut(s)	510, 860, 1351, 1396
Tth111I	GACNNNGTC	1 cut(s)	1566
Van91I	CCANNNNNTGG	1 cut(s)	935
VspI	ATTAAT	1 cut(s)	803
XapI	RAATTY	8 cut(s)	68, 94, 309, 415, 738, 1168, 1180, 1648
XbaI	TCTAGA	1 cut(s)	728
XceI	RCATGY	3 cut(s)	174, 249, 771
XmaJI	CCTAGG	1 cut(s)	181
XspI	CTAG	3 cut(s)	12, 182, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.