No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51690 AT3G51700 AT5G28780 |
| fragaria_vesca | FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911 |
| malus_domestica | MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1 |
| prunus_persica | Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1 |
| pyrus_communis | pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080 |
| rosa_chinensis | RchiOBHm_Chr5g0080791 |
| rosa_multiflora | Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00025650 Rroxscaffold_3G00267580 |
| rosa_rugosa | Rorug06G0008800 |
| rosa_samantha | Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800 |
| rosa_wichuraiana | Rw4G009260 Rw5G045770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 194, 307 |
| AclWI | GGATC | 1 cut(s) | 403 |
| AcoI | YGGCCR | 2 cut(s) | 327, 517 |
| AcsI | RAATTY | 2 cut(s) | 266, 502 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 336 |
| AflIII | ACRYGT | 1 cut(s) | 430 |
| AgsI | TTSAA | 9 cut(s) | 62, 77, 211, 266, 272, 347, 422, 513, 545 |
| AjiI | CACGTC | 2 cut(s) | 26, 131 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 525, 557 |
| AluBI | AGCT | 2 cut(s) | 471, 541 |
| AluI | AGCT | 2 cut(s) | 471, 541 |
| AlwI | GGATC | 1 cut(s) | 403 |
| AoxI | GGCC | 2 cut(s) | 327, 517 |
| ApeKI | GCWGC | 2 cut(s) | 468, 471 |
| ApoI | RAATTY | 2 cut(s) | 266, 502 |
| AseI | ATTAAT | 2 cut(s) | 231, 387 |
| AsuII | TTCGAA | 1 cut(s) | 165 |
| BalI | TGGCCA | 1 cut(s) | 519 |
| BbsI | GAAGAC | 1 cut(s) | 174 |
| BbvI | GCAGC | 2 cut(s) | 458, 480 |
| BccI | CCATC | 2 cut(s) | 245, 457 |
| BceAI | ACGGC | 1 cut(s) | 245 |
| BisI | GCNGC | 2 cut(s) | 469, 472 |
| BlsI | GCNGC | 2 cut(s) | 470, 473 |
| BmgBI | CACGTC | 2 cut(s) | 26, 131 |
| BmsI | GCATC | 2 cut(s) | 271, 449 |
| BpiI | GAAGAC | 1 cut(s) | 174 |
| Bpu14I | TTCGAA | 1 cut(s) | 165 |
| BpuEI | CTTGAG | 1 cut(s) | 357 |
| BsaAI | YACGTR | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 336 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BseXI | GCAGC | 2 cut(s) | 458, 480 |
| BshFI | GGCC | 2 cut(s) | 329, 519 |
| BsiSI | CCGG | 1 cut(s) | 237 |
| BslFI | GGGAC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BsmFI | GGGAC | 1 cut(s) | 149 |
| BsnI | GGCC | 2 cut(s) | 329, 519 |
| Bsp119I | TTCGAA | 1 cut(s) | 165 |
| Bsp143I | GATC | 1 cut(s) | 395 |
| BspACI | CCGC | 2 cut(s) | 194, 307 |
| BspANI | GGCC | 2 cut(s) | 329, 519 |
| BspPI | GGATC | 1 cut(s) | 403 |
| BspQI | GCTCTTC | 1 cut(s) | 57 |
| BspT104I | TTCGAA | 1 cut(s) | 165 |
| BssMI | GATC | 1 cut(s) | 395 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 294 |
| Bst6I | CTCTTC | 1 cut(s) | 57 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 389 |
| BstBAI | YACGTR | 1 cut(s) | 433 |
| BstBI | TTCGAA | 1 cut(s) | 165 |
| BstKTI | GATC | 1 cut(s) | 398 |
| BstMBI | GATC | 1 cut(s) | 395 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 389 |
| BstV1I | GCAGC | 2 cut(s) | 458, 480 |
| BstV2I | GAAGAC | 1 cut(s) | 174 |
| BsuRI | GGCC | 2 cut(s) | 329, 519 |
| BtrI | CACGTC | 2 cut(s) | 26, 131 |
| CviAII | CATG | 1 cut(s) | 86 |
| CviJI | RGCY | 4 cut(s) | 329, 471, 519, 541 |
| CviKI_1 | RGCY | 4 cut(s) | 329, 471, 519, 541 |
| DpnI | GATC | 1 cut(s) | 397 |
| DpnII | GATC | 1 cut(s) | 395 |
| EaeI | YGGCCR | 2 cut(s) | 327, 517 |
| Eam1104I | CTCTTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 1 cut(s) | 57 |
| EcoT22I | ATGCAT | 2 cut(s) | 442, 556 |
| FaeI | CATG | 1 cut(s) | 89 |
| FaiI | YATR | 9 cut(s) | 7, 20, 87, 116, 408, 552, 556, 558, 563 |
| FaqI | GGGAC | 1 cut(s) | 149 |
| FatI | CATG | 1 cut(s) | 85 |
| FauNDI | CATATG | 1 cut(s) | 556 |
| Fnu4HI | GCNGC | 2 cut(s) | 469, 472 |
| Fsp4HI | GCNGC | 2 cut(s) | 469, 472 |
| GluI | GCNGC | 2 cut(s) | 469, 472 |
| HaeIII | GGCC | 2 cut(s) | 329, 519 |
| HapII | CCGG | 1 cut(s) | 237 |
| Hin1II | CATG | 1 cut(s) | 89 |
| HpaII | CCGG | 1 cut(s) | 237 |
| Hpy188I | TCNGA | 2 cut(s) | 202, 501 |
| Hpy188III | TCNNGA | 5 cut(s) | 45, 300, 347, 374, 422 |
| Hpy99I | CGWCG | 2 cut(s) | 30, 132 |
| HpyAV | CCTTC | 1 cut(s) | 177 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 294 |
| HpyCH4IV | ACGT | 3 cut(s) | 25, 130, 432 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 366, 383, 406, 440, 554 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 389 |
| HpySE526I | ACGT | 3 cut(s) | 25, 130, 432 |
| Hsp92II | CATG | 1 cut(s) | 89 |
| Kzo9I | GATC | 1 cut(s) | 395 |
| LguI | GCTCTTC | 1 cut(s) | 57 |
| LpnPI | CCDG | 4 cut(s) | 250, 285, 343, 378 |
| Lsp1109I | GCAGC | 2 cut(s) | 458, 480 |
| LweI | GCATC | 2 cut(s) | 271, 449 |
| MaeII | ACGT | 3 cut(s) | 25, 130, 432 |
| MalI | GATC | 1 cut(s) | 397 |
| MboI | GATC | 1 cut(s) | 395 |
| MboII | GAAGA | 4 cut(s) | 74, 89, 179, 501 |
| MfeI | CAATTG | 2 cut(s) | 449, 513 |
| MlsI | TGGCCA | 1 cut(s) | 519 |
| MluCI | AATT | 6 cut(s) | 266, 384, 449, 480, 502, 513 |
| MluNI | TGGCCA | 1 cut(s) | 519 |
| MmeI | TCCRAC | 2 cut(s) | 267, 466 |
| Mox20I | TGGCCA | 1 cut(s) | 519 |
| Mph1103I | ATGCAT | 2 cut(s) | 442, 556 |
| MscI | TGGCCA | 1 cut(s) | 519 |
| MseI | TTAA | 3 cut(s) | 123, 231, 387 |
| MslI | CAYNNNNRTG | 1 cut(s) | 435 |
| Msp20I | TGGCCA | 1 cut(s) | 519 |
| MspA1I | CMGCKG | 1 cut(s) | 471 |
| MspI | CCGG | 1 cut(s) | 237 |
| MunI | CAATTG | 2 cut(s) | 449, 513 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 389 |
| NdeI | CATATG | 1 cut(s) | 556 |
| NdeII | GATC | 1 cut(s) | 395 |
| NlaIII | CATG | 1 cut(s) | 89 |
| NsiI | ATGCAT | 2 cut(s) | 442, 556 |
| NspV | TTCGAA | 1 cut(s) | 165 |
| PciSI | GCTCTTC | 1 cut(s) | 57 |
| PkrI | GCNGC | 2 cut(s) | 470, 473 |
| Ppu21I | YACGTR | 1 cut(s) | 433 |
| PshBI | ATTAAT | 2 cut(s) | 231, 387 |
| PvuII | CAGCTG | 1 cut(s) | 471 |
| RseI | CAYNNNNRTG | 1 cut(s) | 435 |
| SapI | GCTCTTC | 1 cut(s) | 57 |
| SaqAI | TTAA | 3 cut(s) | 123, 231, 387 |
| SatI | GCNGC | 2 cut(s) | 469, 472 |
| Sau3AI | GATC | 1 cut(s) | 395 |
| SetI | ASST | 7 cut(s) | 28, 133, 341, 435, 473, 543, 550 |
| SfaNI | GCATC | 2 cut(s) | 271, 449 |
| SfuI | TTCGAA | 1 cut(s) | 165 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 435 |
| SmlI | CTYRAG | 1 cut(s) | 372 |
| SmoI | CTYRAG | 1 cut(s) | 372 |
| Sse9I | AATT | 6 cut(s) | 266, 384, 449, 480, 502, 513 |
| SsiI | CCGC | 2 cut(s) | 194, 307 |
| TaaI | ACNGT | 2 cut(s) | 247, 294 |
| TaiI | ACGT | 3 cut(s) | 28, 133, 435 |
| TaqI | TCGA | 3 cut(s) | 28, 165, 227 |
| TasI | AATT | 6 cut(s) | 266, 384, 449, 480, 502, 513 |
| Tru1I | TTAA | 3 cut(s) | 123, 231, 387 |
| Tru9I | TTAA | 3 cut(s) | 123, 231, 387 |
| TseI | GCWGC | 2 cut(s) | 468, 471 |
| TspDTI | ATGAA | 3 cut(s) | 96, 102, 441 |
| TspGWI | ACGGA | 1 cut(s) | 195 |
| VspI | ATTAAT | 2 cut(s) | 231, 387 |
| XapI | RAATTY | 2 cut(s) | 266, 502 |
| Zsp2I | ATGCAT | 2 cut(s) | 442, 556 |