Rh3BG308100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001547
Physical Location & Seq
Reverse (-)
31125784 .. 31126365
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG308100.1

Sequence Viewer

Length: 390 bp
ATGGTTGAGCATTCAATTTCATCTACTGTTGTTGGTGTTACAGACGCTGTACCTGATACCGCTGCTATGCCATCATGTCCAAGGGCTCGAAAAATGCGTGTCGATTCTCAAAAAACTGTAATACATCTTATTTGTATCCTTATAATCAATTATGAATACGTAATTAATAATGAGAAAAGGAACAGGTACATACCCTTTTCTTCATTGATTTTCCTTTGTACATGTTTGAATGTGAAAAGGAATTCAGGTGTGCCAAAAATTGGATCTTTGGGAAAGTTTTGGAATTTTGTTATTGAAATTCTGAGTGGGTATTTGGAACCTCTGTTTTCTGTCAATTTGGGTGCAATCAATTTTGGCATATTGTCTAATTGGTCAGTGATGAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.38

Weight (kDa)

9.02

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 260
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 3 cut(s) 241, 283, 297
AfaI GTAC 3 cut(s) 51, 188, 220
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 3 cut(s) 15, 229, 296
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 3 cut(s) 241, 283, 297
AseI ATTAAT 1 cut(s) 165
BanII GRGCYC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 79
BciVI GTATCC 1 cut(s) 146
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 260
BsmI GAATGC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 1 cut(s) 263
BspACI CCGC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 28, 118
BstAUI TGTACA 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 302
BstKTI GATC 1 cut(s) 266
BstMBI GATC 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 225
BstSNI TACGTA 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuI GTATCC 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 381
CaiI CAGNNNCTG 1 cut(s) 47
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 50, 187, 219
CviAII CATG 2 cut(s) 75, 222
CviJI RGCY 1 cut(s) 86
CviKI_1 RGCY 1 cut(s) 86
CviQI GTAC 3 cut(s) 50, 187, 219
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eco105I TACGTA 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 78, 225
FaiI YATR 7 cut(s) 68, 76, 143, 153, 191, 223, 359
FatI CATG 2 cut(s) 74, 221
Fnu4HI GCNGC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HgaI GACGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 78, 225
HinfI GANTC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 303
HpyCH4III ACNGT 2 cut(s) 28, 118
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 2 cut(s) 78, 225
Kzo9I GATC 1 cut(s) 263
LpnPI CCDG 3 cut(s) 66, 169, 231
Lsp1109I GCAGC 1 cut(s) 49
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 1 cut(s) 192
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 88
MnlI CCTC 1 cut(s) 330
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 10
NdeII GATC 1 cut(s) 263
NlaIII CATG 2 cut(s) 78, 225
NlaIV GGNNCC 1 cut(s) 318
NspI RCATGY 1 cut(s) 225
PciI ACATGT 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 160
PscI ACATGT 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 165
PsiI TTATAA 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 3 cut(s) 51, 188, 220
RsaNI GTAC 3 cut(s) 50, 187, 219
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 263
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 55, 162, 188, 250, 322
SgeI CNNG 8 cut(s) 65, 87, 93, 99, 110, 196, 234, 258
SnaBI TACGTA 1 cut(s) 160
SsiI CCGC 1 cut(s) 60
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 28, 118
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 88, 102
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 381
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 9, 168, 192
TspRI CASTG 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 260
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 3 cut(s) 241, 283, 297
XceI RCATGY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.