Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Forward (+)

15602284 .. 15603456

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21911.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGTGCCTCTACCAGTGCTCAACTAGGTAGTGATAATTTTCGTCGTAAAAGAAGAAGGCATGAGGATATTGTTTGTTTACAAAGTGATTTTGGTTCTCCTCGACACACATCTGGTGCTATGAGAGATGCGCCGAATGACATCGTTGATCATTGTGACCGAGGAATTGATGTTTTGACTGTTGCGCAGTCTAATATTGGACAGGCGTTCTATCAAAGGAGAAGACTAAGAGTCTACACATATGTAGATGTTGAGGATATGACAAATGTGTGTGTTGGTTGTGATGTGTTGTTCTGGTTGCAAGAGTCAAAATCAGTTCGAAAAAATGGGAGGCCGATTTATATAGGCTGCTGCCAGGAAGGATGTGTTAAACTACCCTTTGTAAGAACTACTCTAGCCCTTTTAGAATACTTGCTTGATCCCACTAAGGGTCAGAGAAGTGTGGAATTTAGAAAGAACATTCGTGCTTATAATACTATGTTTGCATTTACATCAATGGGAGCTAATATAGACACAACAGTGATTGATGGTCATGGCCCCTATGTGTTTAAAATTAGTGGACAAATATTTCATCTTATGGATTCACTTATTCCTCCAGAAGGCGAACGTCTAAAGTTTGCACAATTGTACATATATGACACTGAAAATGAGGTTGCAAACCGGCAACAAGCTATTGATGGTATGGACTCAGAAATTTCAGTTCATGGAATATCCATCATTGCAAACCGCGGCAACGCGCGGGCATCATCTAGTAACAAATACTATGACAAACAGGGCGCCATTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

263

Amino Acids

29.54

Weight (kDa)

8.13

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
Acc16I	TGCGCA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	776
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	3 cut(s)	729, 737, 739
AciI	CCGC	3 cut(s)	727, 729, 739
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	446, 693
AcyI	GRCGYC	1 cut(s)	777
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	2 cut(s)	428, 599
AhdI	GACNNNNNGTC	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	354
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	2 cut(s)	503, 671
AluI	AGCT	2 cut(s)	503, 671
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	332, 535
ApeKI	GCWGC	2 cut(s)	348, 351
ApoI	RAATTY	2 cut(s)	446, 693
AspLEI	GCGC	4 cut(s)	133, 187, 739, 779
AspS9I	GGNCC	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	335, 338
BccI	CCATC	3 cut(s)	521, 671, 722
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	3 cut(s)	26, 395, 750
BfoI	RGCGCY	1 cut(s)	780
BisI	GCNGC	3 cut(s)	349, 352, 730
BlsI	GCNGC	3 cut(s)	350, 353, 731
Bme1390I	CCNGG	1 cut(s)	356
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	2 cut(s)	538, 778
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	118, 752
BpiI	GAAGAC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	160, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 599
Bse118I	RCCGGY	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	160, 727
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	428, 599
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	335, 338
Bsh1236I	CGCG	3 cut(s)	729, 737, 739
BshFI	GGCC	2 cut(s)	334, 537
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	661
BslI	CCNNNNNNNGG	2 cut(s)	428, 599
BsnI	GGCC	2 cut(s)	334, 537
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	148, 418
BspACI	CCGC	3 cut(s)	727, 729, 739
BspANI	GGCC	2 cut(s)	334, 537
BspCNI	CTCAG	1 cut(s)	701
BspFNI	CGCG	3 cut(s)	729, 737, 739
BspLI	GGNNCC	2 cut(s)	538, 778
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	160, 727
BssMI	GATC	2 cut(s)	148, 418
BssNI	GRCGYC	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	181, 520
BstACI	GRCGYC	1 cut(s)	777
BstAUI	TGTACA	1 cut(s)	627
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	3 cut(s)	227, 426, 688
BstDSI	CCRYGG	1 cut(s)	727
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	3 cut(s)	729, 737, 739
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	4 cut(s)	133, 187, 739, 779
BstKTI	GATC	2 cut(s)	151, 421
BstMBI	GATC	2 cut(s)	148, 418
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	3 cut(s)	729, 737, 739
BstV1I	GCAGC	2 cut(s)	335, 338
BstV2I	GAAGAC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	334, 537
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	3 cut(s)	22, 525, 639
Cac8I	GCNNGC	1 cut(s)	741
CfoI	GCGC	4 cut(s)	133, 187, 739, 779
Cfr10I	RCCGGY	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	536
Cfr42I	CCGCGG	1 cut(s)	730
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	3 cut(s)	62, 533, 704
CviJI	RGCY	6 cut(s)	334, 348, 398, 503, 537, 671
CviKI_1	RGCY	6 cut(s)	334, 348, 398, 503, 537, 671
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	3 cut(s)	227, 426, 688
DinI	GGCGCC	1 cut(s)	778
DpnI	GATC	2 cut(s)	150, 420
DpnII	GATC	2 cut(s)	148, 418
DraI	TTTAAA	1 cut(s)	550
DriI	GACNNNNNGTC	1 cut(s)	230
Eam1105I	GACNNNNNGTC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	354
EgeI	GGCGCC	1 cut(s)	778
EheI	GGCGCC	1 cut(s)	778
FaeI	CATG	3 cut(s)	65, 536, 707
FatI	CATG	3 cut(s)	61, 532, 703
FauI	CCCGC	1 cut(s)	732
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	349, 352, 730
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	349, 352, 730
FspBI	CTAG	3 cut(s)	26, 395, 750
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	4 cut(s)	132, 186, 738, 778
GluI	GCNGC	3 cut(s)	349, 352, 730
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	2 cut(s)	334, 537
HapII	CCGG	1 cut(s)	661
HhaI	GCGC	4 cut(s)	133, 187, 739, 779
Hin1I	GRCGYC	1 cut(s)	777
Hin1II	CATG	3 cut(s)	65, 536, 707
Hin6I	GCGC	4 cut(s)	131, 185, 737, 777
HinP1I	GCGC	4 cut(s)	131, 185, 737, 777
HinfI	GANTC	4 cut(s)	231, 305, 581, 686
HpaII	CCGG	1 cut(s)	661
Hpy166II	GTNNAC	3 cut(s)	80, 235, 560
Hpy188I	TCNGA	2 cut(s)	435, 691
Hpy188III	TCNNGA	1 cut(s)	596
Hpy8I	GTNNAC	3 cut(s)	80, 235, 560
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	51, 353, 593
HpyCH4III	ACNGT	2 cut(s)	181, 520
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	5 cut(s)	301, 485, 620, 656, 722
HpyF3I	CTNAG	3 cut(s)	227, 426, 688
HpySE526I	ACGT	1 cut(s)	607
Hsp92I	GRCGYC	1 cut(s)	777
Hsp92II	CATG	3 cut(s)	65, 536, 707
HspAI	GCGC	4 cut(s)	131, 185, 737, 777
KasI	GGCGCC	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	148
KspI	CCGCGG	1 cut(s)	730
Kzo9I	GATC	2 cut(s)	148, 418
LmnI	GCTCC	1 cut(s)	500
LpnPI	CCDG	9 cut(s)	28, 99, 188, 280, 341, 368, 609, 674, 758
Lsp1109I	GCAGC	2 cut(s)	335, 338
LweI	GCATC	2 cut(s)	118, 752
MaeI	CTAG	3 cut(s)	26, 395, 750
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	2 cut(s)	155, 752
MalI	GATC	2 cut(s)	150, 420
MboI	GATC	2 cut(s)	148, 418
MboII	GAAGA	2 cut(s)	66, 234
MfeI	CAATTG	1 cut(s)	623
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	6 cut(s)	37, 165, 446, 552, 623, 693
Mly113I	GGCGCC	1 cut(s)	777
MlyI	GAGTC	3 cut(s)	240, 314, 680
MnlI	CCTC	8 cut(s)	19, 58, 111, 155, 247, 324, 603, 643
MseI	TTAA	2 cut(s)	369, 549
MslI	CAYNNNNRTG	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	1 cut(s)	661
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	3 cut(s)	729, 737, 739
NarI	GGCGCC	1 cut(s)	777
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	2 cut(s)	148, 418
NlaIII	CATG	3 cut(s)	65, 536, 707
NlaIV	GGNNCC	2 cut(s)	538, 778
NmuCI	GTSAC	1 cut(s)	155
NsbI	TGCGCA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	319
OliI	CACNNNNGTG	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	3 cut(s)	350, 353, 731
PleI	GAGTC	3 cut(s)	239, 313, 680
PluTI	GGCGCC	1 cut(s)	780
PpsI	GAGTC	3 cut(s)	239, 313, 680
PsiI	TTATAA	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	538, 778
PspPI	GGNCC	1 cut(s)	536
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	518
SacII	CCGCGG	1 cut(s)	730
SaqAI	TTAA	2 cut(s)	369, 549
SatI	GCNGC	3 cut(s)	349, 352, 730
Sau3AI	GATC	2 cut(s)	148, 418
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	3 cut(s)	240, 314, 680
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	5 cut(s)	31, 505, 610, 654, 673
SfaNI	GCATC	2 cut(s)	118, 752
SfoI	GGCGCC	1 cut(s)	778
Sfr303I	CCGCGG	1 cut(s)	730
SfuI	TTCGAA	1 cut(s)	319
SgrBI	CCGCGG	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	6 cut(s)	37, 165, 446, 552, 623, 693
SsiI	CCGC	3 cut(s)	727, 729, 739
SspDI	GGCGCC	1 cut(s)	776
SspI	AATATT	2 cut(s)	196, 567
SspMI	CTAG	3 cut(s)	26, 395, 750
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	181, 520
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	2 cut(s)	103, 319
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	6 cut(s)	37, 165, 446, 552, 623, 693
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	369, 549
Tru9I	TTAA	2 cut(s)	369, 549
TscAI	CASTG	3 cut(s)	22, 525, 646
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	348, 351
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	560, 692
TspRI	CASTG	3 cut(s)	22, 525, 646
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	2 cut(s)	446, 693
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	3 cut(s)	26, 395, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.