Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

18733000 .. 18738780

Gene Structure 5781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAAGCTTGATGATCTGCTTGATTTCATCAAATCTGGACAGCCTTTTGGAGAGGTTGATGCAAATAAGTTCTACAAGTTTTTTTTTATTTTTATTATATGTCTTTTTTTCCTTTATAGTGAATCTAACTTTTTTCTTTTTTTGGTTTTTTTTTTAATTTTTTTCTATTTGTTGTTTTTACAAATAGATGTTTGTACAATTGAATTTCAAAAAAGAGGTTTGCCTCATTCTCATATGTTAATATGGTTGAGACCAAAATTTAAATGTTACACAGCATCAGATATAGATTCTATCATTTCAGCTGAGTTACCAGACAAATTTATGAACCCTCGGCTTTATGAAATTGTTAATCAATTTATGATTCATGGTCCATGTGGTTATATCAATCGGAATTCTTCTTGCATGCGAGAAAATAAATGCACCAAAAATTTTCCCAAGGCGTATAAAAATGAGACGGTTTTTGACCCGAGTGGCTTTCCTGTTTATAGGCGTCGTGATGATGAGACAAAATTTGTAGTAAAAAATGGAATTAAAGTTGATAATAGTTTTGTTGTTCCTTATAATTCTGAATTGCTTTTGAGATATAATGCTCATATAAATGTTGAATTTTGTTGTCAATCAACACTTATAAAATATTTGTTCAAATATGTAAATAAAGGTTCAGATAGAGCACGGTTGGTTCTTCAGCAAAATCCAAATGATGAAATATTAACATATCTAAATTGTAGATATATATCACCTTATGAAGCTGTTTGGAGATTGTTTCAGTATTCTATACATCATAGGGAACCTTCTGTGGAACGATTACCTGTGCATTTACCATTAGAACAAAATATTGTTTTTTGTGGTGACCAATCACTGCAATCAATTATTAATCAAAATGCTTCTGACCATACAATGTTGACAAGTTGGTTTGAAACTAACAAAATTTATGCTGAAGCACGTTCATTGACTTATGCACAGATTCCATCAAAGTTTGTATATGATCCGCGGAAAAAAATTTGGAAGCCCAGGAAACATAAAGGTTCTATAGGCAGAATAGCGTATGTACATCCTGCATCAGGTAGTCAGCCTGTTGAATCTCGCTCACTTGCAGAGTTGATCACCTACTTTGTTTCATATGGAGGTTTGACCCCAATTTTTTCGTTGCGTTATAACAATGTAATTCTTGCTTGCACAAACTACAAGGTGTCCAGCTTGCAAAAATTACAAGTTATGCTACAATCTATACTTCTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF223 Helitron_like_N PIF1

Protein Analysis

414

Amino Acids

48.49

Weight (kDa)

9.11

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	561, 629, 1155
AccII	CGCG	1 cut(s)	991
AciI	CCGC	2 cut(s)	989, 991
AclWI	GGATC	1 cut(s)	980
AcsI	RAATTY	9 cut(s)	203, 257, 317, 391, 427, 509, 605, 927, 999
AcuI	CTGAAG	2 cut(s)	668, 957
AcyI	GRCGYC	1 cut(s)	490
AfaI	GTAC	2 cut(s)	196, 1050
AfiI	CCNNNNNNNGG	1 cut(s)	1061
AgsI	TTSAA	6 cut(s)	203, 209, 605, 643, 917, 1079
AjnI	CCWGG	1 cut(s)	1010
AluBI	AGCT	4 cut(s)	7, 302, 749, 1197
AluI	AGCT	4 cut(s)	7, 302, 749, 1197
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	3 cut(s)	244, 446, 497
AlwI	GGATC	1 cut(s)	980
Ama87I	CYCGRG	1 cut(s)	466
ApoI	RAATTY	9 cut(s)	203, 257, 317, 391, 427, 509, 605, 927, 999
AseI	ATTAAT	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	729, 860, 1096
AvaI	CYCGRG	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	673
BccI	CCATC	1 cut(s)	976
BciT130I	CCWGG	1 cut(s)	1012
BclI	TGATCA	1 cut(s)	1101
BcoDI	GTCTC	3 cut(s)	244, 446, 497
BfmI	CTRYAG	1 cut(s)	1029
Bme1390I	CCNGG	1 cut(s)	1012
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	789
BmrFI	CCNGG	1 cut(s)	1012
BmsI	GCATC	3 cut(s)	49, 284, 1067
BsaBI	GATNNNNATC	1 cut(s)	733
BsaHI	GRCGYC	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	4 cut(s)	329, 435, 989, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	1061
Bse8I	GATNNNNATC	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	1012
BseDI	CCNNGG	4 cut(s)	329, 435, 989, 1010
BseGI	GGATG	1 cut(s)	1051
BseJI	GATNNNNATC	1 cut(s)	733
BseLI	CCNNNNNNNGG	1 cut(s)	1061
BseMII	CTCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	991
BsiHKAI	GWGCWC	1 cut(s)	673
BsiHKCI	CYCGRG	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	1061
BsmAI	GTCTC	3 cut(s)	244, 446, 497
BsmBI	CGTCTC	1 cut(s)	446
Bso31I	GGTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp1407I	TGTACA	2 cut(s)	194, 1048
Bsp143I	GATC	3 cut(s)	13, 985, 1101
BspACI	CCGC	2 cut(s)	989, 991
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	991
BspLI	GGNNCC	1 cut(s)	789
BspPI	GGATC	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	244
BsrGI	TGTACA	2 cut(s)	194, 1048
BssECI	CCNNGG	4 cut(s)	329, 435, 989, 1010
BssMI	GATC	3 cut(s)	13, 985, 1101
BssNI	GRCGYC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	1012
Bst4CI	ACNGT	2 cut(s)	457, 675
BstACI	GRCGYC	1 cut(s)	490
BstAUI	TGTACA	2 cut(s)	194, 1048
BstC8I	GCNNGC	3 cut(s)	404, 1174, 1199
BstDEI	CTNAG	2 cut(s)	303, 1235
BstDSI	CCRYGG	1 cut(s)	989
BstEII	GGTNACC	1 cut(s)	848
BstENI	CCTNNNNNAGG	1 cut(s)	1059
BstF5I	GGATG	1 cut(s)	1051
BstFNI	CGCG	1 cut(s)	991
BstKTI	GATC	3 cut(s)	16, 988, 1104
BstMAI	GTCTC	3 cut(s)	244, 446, 497
BstMBI	GATC	3 cut(s)	13, 985, 1101
BstNI	CCWGG	1 cut(s)	1012
BstNSI	RCATGY	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	1010
BstSFI	CTRYAG	1 cut(s)	1029
BstUI	CGCG	1 cut(s)	991
BtgI	CCRYGG	1 cut(s)	989
BtsCI	GGATG	1 cut(s)	1051
BtsI	GCAGTG	1 cut(s)	857
BtsIMutI	CAGTG	1 cut(s)	857
Cac8I	GCNNGC	3 cut(s)	404, 1174, 1199
Cfr13I	GGNCC	1 cut(s)	368
Cfr42I	CCGCGG	1 cut(s)	992
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	195, 1049
CviAII	CATG	3 cut(s)	365, 372, 403
CviJI	RGCY	9 cut(s)	7, 43, 302, 334, 474, 749, 1009, 1072, 1197
CviKI_1	RGCY	9 cut(s)	7, 43, 302, 334, 474, 749, 1009, 1072, 1197
CviQI	GTAC	2 cut(s)	195, 1049
DdeI	CTNAG	2 cut(s)	303, 1235
DpnI	GATC	3 cut(s)	15, 987, 1103
DpnII	GATC	3 cut(s)	13, 985, 1101
DraI	TTTAAA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	2 cut(s)	668, 957
Eco88I	CYCGRG	1 cut(s)	466
Eco91I	GGTNACC	1 cut(s)	848
EcoNI	CCTNNNNNAGG	1 cut(s)	1059
EcoO65I	GGTNACC	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	1010
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	3 cut(s)	368, 375, 406
FatI	CATG	3 cut(s)	364, 371, 402
FauNDI	CATATG	2 cut(s)	234, 1120
FbaI	TGATCA	1 cut(s)	1101
FokI	GGATG	1 cut(s)	1038
HgaI	GACGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	368, 375, 406
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	5 cut(s)	122, 287, 361, 964, 1079
HphI	GGTGA	3 cut(s)	729, 860, 1096
Hpy166II	GTNNAC	1 cut(s)	903
Hpy188I	TCNGA	5 cut(s)	280, 390, 568, 664, 889
Hpy188III	TCNNGA	2 cut(s)	36, 494
Hpy8I	GTNNAC	1 cut(s)	903
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	1 cut(s)	801
HpyCH4III	ACNGT	2 cut(s)	457, 675
HpyCH4IV	ACGT	1 cut(s)	943
HpyF3I	CTNAG	2 cut(s)	303, 1235
HpySE526I	ACGT	1 cut(s)	943
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	3 cut(s)	368, 375, 406
Ksp22I	TGATCA	1 cut(s)	1101
KspI	CCGCGG	1 cut(s)	992
Kzo9I	GATC	3 cut(s)	13, 985, 1101
LweI	GCATC	3 cut(s)	49, 284, 1067
MaeII	ACGT	1 cut(s)	943
MaeIII	GTNAC	3 cut(s)	266, 306, 848
MalI	GATC	3 cut(s)	15, 987, 1103
MboI	GATC	3 cut(s)	13, 985, 1101
MboII	GAAGA	2 cut(s)	387, 674
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	673
MnlI	CCTC	5 cut(s)	46, 209, 234, 339, 1118
MseI	TTAA	7 cut(s)	155, 239, 261, 348, 531, 710, 873
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	2 cut(s)	302, 991
MspR9I	CCNGG	1 cut(s)	1012
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	1012
MvnI	CGCG	1 cut(s)	991
NdeI	CATATG	2 cut(s)	234, 1120
NdeII	GATC	3 cut(s)	13, 985, 1101
NlaIII	CATG	3 cut(s)	368, 375, 406
NlaIV	GGNNCC	1 cut(s)	789
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	848
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PfeI	GAWTC	5 cut(s)	122, 287, 361, 964, 1079
PshBI	ATTAAT	1 cut(s)	873
PsiI	TTATAA	3 cut(s)	561, 629, 1155
Psp6I	CCWGG	1 cut(s)	1010
PspEI	GGTNACC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	1010
PspN4I	GGNNCC	1 cut(s)	789
PspPI	GGNCC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	196, 1050
RsaNI	GTAC	2 cut(s)	195, 1049
RseI	CAYNNNNRTG	1 cut(s)	597
SacII	CCGCGG	1 cut(s)	992
SaqAI	TTAA	7 cut(s)	155, 239, 261, 348, 531, 710, 873
Sau3AI	GATC	3 cut(s)	13, 985, 1101
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	1012
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	3 cut(s)	49, 284, 1067
SfcI	CTRYAG	1 cut(s)	1029
Sfr303I	CCGCGG	1 cut(s)	992
SgrBI	CCGCGG	1 cut(s)	992
SinI	GGWCC	1 cut(s)	368
SmiI	ATTTAAAT	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	597
SphI	GCATGC	1 cut(s)	406
SsiI	CCGC	2 cut(s)	989, 991
SspI	AATATT	3 cut(s)	635, 708, 835
StyD4I	CCNGG	1 cut(s)	1010
StyI	CCWWGG	1 cut(s)	435
SwaI	ATTTAAAT	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	457, 675
TaiI	ACGT	1 cut(s)	946
TatI	WGTACW	2 cut(s)	194, 1048
TfiI	GAWTC	5 cut(s)	122, 287, 361, 964, 1079
Tru1I	TTAA	7 cut(s)	155, 239, 261, 348, 531, 710, 873
Tru9I	TTAA	7 cut(s)	155, 239, 261, 348, 531, 710, 873
TscAI	CASTG	1 cut(s)	864
TseFI	GTSAC	1 cut(s)	848
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	9 cut(s)	16, 17, 338, 353, 354, 717, 759, 936, 1107
TspRI	CASTG	1 cut(s)	864
VpaK11BI	GGWCC	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	873
XagI	CCTNNNNNAGG	1 cut(s)	1059
XapI	RAATTY	9 cut(s)	203, 257, 317, 391, 427, 509, 605, 927, 999
XceI	RCATGY	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.