pycom05g13700

Belongs to the helicase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
17190311 .. 17194275
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13700.3

Sequence Viewer

Length: 1719 bp
ATGGTGTTGCAAGATGTTCCCACCGCTTATGACGATGAATACAACAGTACTTCAACCTCTTTAGTATTTTCAAACAAAGGAAACAACAGTCTCCAAACATTTACACCAAGTTTTGAACAAAATACTCCCGTTGGTGGTGTTTTTACGTCACATTTGGTAGCTGGAACAAGTTCTCATCAAGTTTCTATACCTCTTCTTATCGCTGATCGTACCACTGTGCATTGTCTGTTGGCCAGAAATACTCCAGGTATTCATTCTGTTACAAACCCGCTCATTATCGGGCAGGCCACCTATCAGAAAAAAAGAAAGCAAGGTGACGATCCTAAATTTGCACAACTGTACATTTATGACACTCAGAATGAAGTCAGCAATCGTATCGGTTGTTTCAACAGATCAGAAGCATCTGAAAAACTCGATCAACAAGTTGTTGGTGGCCTCATTAAAATGCTAGATGAGTGTAATGAAGTCGTTCAACTTTTTAGGCAAGCCAGGGATAGAATTGATGAAAGATCCACAAGTAATTTACGCCTACGTTTGTACGGTGCACAGAGCAACCATGATATGCAATACAATCTACCGACATGTGACGGGATTGGTGGCTTGATAGTTGGGGACATTGGCCAATTTCACACCGAAAGGGATATTGTTGTGGAGCATAAAACAGATGGCCTACAGAGAATCACAAAGTTACATCCTAAGTACATGGCTCTTCAATATCCTCTTCTTTTCCCATATGGTGAAGATGGGTACAGAAAAGGACTTCCTTGGAATCCAAATTTTAGGGGGAAAAAACCAAAGAATGGGGGGGTAACAATGAGAGCATTTTTGGGTTATCAAATTCACGATAGACCAGGACAAAGTGACACCCTGTTAAAAGGCGGCAGATTGTTTCAACAATACTTAGTTGACGCATATGCGACTCTTGAAGAAGATCGGTTAGACTTCATTAGGTTAAATCAAGATTCTTTTAGAGCAGAAGGTCTTAAAGGAATTCATGAAGCTCTCAAAGCAGGAAATGCAAGCAGTTCTGGTGTTGGCAAGAGAGTTATTCTGCCAACTTCGTTTACTGGCAGTGTTAGATATATGATAAATAATTATCAGGATGCTATGGCTATATGTCGCCACCATGGAAATCTTGATTTATTTATCACTTTCACCTGCAATGCTAAATGGCCTGAGATTATTGAAGATCTACGTGATAAACCTGGTTGTAAAGCTGAAGACAGGCCAGATTTAACTTCCAGAATTTTTAAAGCAAAACTTGACCATTTGATAAAATACCTCAAGTCAGGAAAACCTTTTGGTGTTGTCGAATCAGTGATTTACACGGTGGAGTTCCAAAAAAGAGGTCTTCCTCATTGTCATATCTTGCTCTGGGTTAATAAACATTATAAGTGTCATTCGCCTTATGATGTTGATTCTATCATTTCGGCTGAGATTCCTAATGAAGGATGTGACAAAGCTGGGTATGATGCAGTTTCGCAATACATGATGCACGACCCATGTGGTGTTGCGAATCAATTTTCACCTTGCATGAAAGAAAACAAATGTTCAAAAAAATTTCCTAAATCTTTCACAAGTGAAACCACTTTTTCCACAGAGGGATTCGTTGCATATAAGCGTCGAGATATAGAGAATCTGTTTTTCATACCTTTGGCCCTGTTTAACAATTTTTTTCTTAAAGCAAAACATGAGGCTTTCGAAAGCAAATCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

573

Amino Acids

64.58

Weight (kDa)

8.4

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1392
AarI CACCTGC 1 cut(s) 1166
Acc36I ACCTGC 1 cut(s) 1166
AccB7I CCANNNNNTGG 1 cut(s) 800
AccBSI CCGCTC 1 cut(s) 271
AciI CCGC 3 cut(s) 24, 269, 879
AclWI GGATC 2 cut(s) 314, 504
AcoI YGGCCR 2 cut(s) 231, 619
AcsI RAATTY 6 cut(s) 326, 775, 837, 990, 1245, 1559
AcuI CTGAAG 1 cut(s) 1239
AfaI GTAC 6 cut(s) 49, 211, 341, 539, 701, 749
AfiI CCNNNNNNNGG 3 cut(s) 134, 800, 1448
AflIII ACRYGT 1 cut(s) 581
AjnI CCWGG 4 cut(s) 244, 488, 850, 1204
AluBI AGCT 4 cut(s) 161, 1001, 1217, 1463
AluI AGCT 4 cut(s) 161, 1001, 1217, 1463
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 95
Alw44I GTGCAC 1 cut(s) 543
AlwI GGATC 2 cut(s) 314, 504
AoxI GGCC 8 cut(s) 231, 285, 433, 619, 667, 1172, 1226, 1656
ApaLI GTGCAC 1 cut(s) 543
ApoI RAATTY 6 cut(s) 326, 775, 837, 990, 1245, 1559
ArsI GACNNNNNNTTYG 2 cut(s) 1333, 1365
Asp700I GAANNNNTTC 2 cut(s) 169, 468
AspS9I GGNCC 1 cut(s) 1657
AsuHPI GGTGA 4 cut(s) 326, 749, 1147, 1518
AsuII TTCGAA 1 cut(s) 1701
BaeGI GKGCMC 1 cut(s) 547
BalI TGGCCA 2 cut(s) 233, 621
BbsI GAAGAC 2 cut(s) 1227, 1343
Bbv12I GWGCWC 1 cut(s) 547
BccI CCATC 2 cut(s) 659, 737
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 4 cut(s) 246, 490, 852, 1206
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 1166
BglII AGATCT 1 cut(s) 1189
BisI GCNGC 1 cut(s) 880
BlsI GCNGC 1 cut(s) 881
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 4 cut(s) 246, 490, 852, 1206
BmgT120I GGNCC 1 cut(s) 1657
BmrFI CCNGG 4 cut(s) 246, 490, 852, 1206
BmsI GCATC 4 cut(s) 410, 1093, 1462, 1482
BpiI GAAGAC 2 cut(s) 1227, 1343
BpmI CTGGAG 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 1701
BpuEI CTTGAG 1 cut(s) 1268
BsaAI YACGTR 1 cut(s) 1196
BsaJI CCNNGG 3 cut(s) 489, 764, 1126
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 800, 1448
Bse1I ACTGG 1 cut(s) 1072
Bse3DI GCAATG 1 cut(s) 1168
BseBI CCWGG 4 cut(s) 246, 490, 852, 1206
BseDI CCNNGG 3 cut(s) 489, 764, 1126
BseGI GGATG 3 cut(s) 691, 1108, 1457
BseLI CCNNNNNNNGG 3 cut(s) 134, 800, 1448
BseMI GCAATG 1 cut(s) 1168
BseMII CTCAG 3 cut(s) 368, 1167, 1425
BseNI ACTGG 1 cut(s) 1072
BseSI GKGCMC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 1463
BshFI GGCC 8 cut(s) 233, 287, 435, 621, 669, 1174, 1228, 1658
BsiHKAI GWGCWC 1 cut(s) 547
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 3 cut(s) 134, 800, 1448
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 626
BsnI GGCC 8 cut(s) 233, 287, 435, 621, 669, 1174, 1228, 1658
Bsp119I TTCGAA 1 cut(s) 1701
Bsp1286I GDGCHC 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
Bsp19I CCATGG 1 cut(s) 1126
BspACI CCGC 3 cut(s) 24, 269, 879
BspANI GGCC 8 cut(s) 233, 287, 435, 621, 669, 1174, 1228, 1658
BspCNI CTCAG 3 cut(s) 367, 1168, 1426
BspHI TCATGA 1 cut(s) 994
BspMI ACCTGC 1 cut(s) 1166
BspPI GGATC 2 cut(s) 314, 504
BspQI GCTCTTC 1 cut(s) 714
BspT104I TTCGAA 1 cut(s) 1701
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 1168
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 1 cut(s) 1072
BssECI CCNNGG 3 cut(s) 489, 764, 1126
BssMI GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
BssT1I CCWWGG 2 cut(s) 764, 1126
Bst2UI CCWGG 4 cut(s) 246, 490, 852, 1206
Bst4CI ACNGT 6 cut(s) 47, 89, 217, 339, 542, 1330
Bst6I CTCTTC 3 cut(s) 198, 714, 726
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 1196
BstBI TTCGAA 1 cut(s) 1701
BstC8I GCNNGC 3 cut(s) 285, 486, 1021
BstDEI CTNAG 5 cut(s) 354, 696, 901, 1176, 1434
BstDSI CCRYGG 1 cut(s) 1126
BstENI CCTNNNNNAGG 1 cut(s) 1446
BstF5I GGATG 3 cut(s) 691, 1108, 1457
BstKTI GATC 7 cut(s) 208, 322, 395, 418, 512, 934, 1192
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
BstMWI GCNNNNNNNGC 2 cut(s) 1007, 1016
BstNI CCWGG 4 cut(s) 246, 490, 852, 1206
BstNSI RCATGY 1 cut(s) 585
BstSCI CCNGG 4 cut(s) 244, 488, 850, 1204
BstSFI CTRYAG 1 cut(s) 671
BstSLI GKGCMC 1 cut(s) 547
BstV2I GAAGAC 2 cut(s) 1227, 1343
BstX2I RGATCY 2 cut(s) 509, 1189
BstYI RGATCY 2 cut(s) 509, 1189
BsuRI GGCC 8 cut(s) 233, 287, 435, 621, 669, 1174, 1228, 1658
BtgI CCRYGG 1 cut(s) 1126
BtsCI GGATG 3 cut(s) 691, 1108, 1457
BtsI GCAGTG 1 cut(s) 1078
BtsIMutI CAGTG 3 cut(s) 213, 1078, 1323
BveI ACCTGC 1 cut(s) 1166
Cac8I GCNNGC 3 cut(s) 285, 486, 1021
CciI TCATGA 1 cut(s) 994
Cfr13I GGNCC 1 cut(s) 1657
CseI GACGC 2 cut(s) 917, 1610
CsiI ACCWGGT 1 cut(s) 1204
Csp6I GTAC 6 cut(s) 48, 210, 340, 538, 700, 748
CviAII CATG 9 cut(s) 557, 582, 703, 995, 1127, 1489, 1503, 1534, 1691
CviQI GTAC 6 cut(s) 48, 210, 340, 538, 700, 748
DdeI CTNAG 5 cut(s) 354, 696, 901, 1176, 1434
DpnI GATC 7 cut(s) 207, 321, 394, 417, 511, 933, 1191
DpnII GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
DraI TTTAAA 1 cut(s) 1252
EaeI YGGCCR 2 cut(s) 231, 619
Eam1104I CTCTTC 3 cut(s) 198, 714, 726
EarI CTCTTC 3 cut(s) 198, 714, 726
Eco130I CCWWGG 2 cut(s) 764, 1126
Eco57I CTGAAG 1 cut(s) 1239
EcoNI CCTNNNNNAGG 1 cut(s) 1446
EcoRI GAATTC 1 cut(s) 990
EcoRII CCWGG 4 cut(s) 244, 488, 850, 1204
EcoT14I CCWWGG 2 cut(s) 764, 1126
ErhI CCWWGG 2 cut(s) 764, 1126
FaeI CATG 9 cut(s) 560, 585, 706, 998, 1130, 1492, 1506, 1537, 1694
FalI AAGNNNNNCTT 2 cut(s) 1245, 1277
FaqI GGGAC 1 cut(s) 626
FatI CATG 9 cut(s) 556, 581, 702, 994, 1126, 1488, 1502, 1533, 1690
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 2 cut(s) 733, 913
Fnu4HI GCNGC 1 cut(s) 880
FokI GGATG 3 cut(s) 678, 1115, 1464
Fsp4HI GCNGC 1 cut(s) 880
FspBI CTAG 1 cut(s) 449
GluI GCNGC 1 cut(s) 880
GsaI CCCAGC 1 cut(s) 1467
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 8 cut(s) 233, 287, 435, 621, 669, 1174, 1228, 1658
HgaI GACGC 2 cut(s) 917, 1610
Hin1II CATG 9 cut(s) 560, 585, 706, 998, 1130, 1492, 1506, 1537, 1694
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HphI GGTGA 4 cut(s) 326, 749, 1147, 1518
Hpy166II GTNNAC 3 cut(s) 545, 907, 1065
Hpy188I TCNGA 4 cut(s) 297, 357, 397, 406
Hpy8I GTNNAC 3 cut(s) 545, 907, 1065
Hpy99I CGWCG 1 cut(s) 1626
HpyAV CCTTC 2 cut(s) 971, 1442
HpyCH4III ACNGT 6 cut(s) 47, 89, 217, 339, 542, 1330
HpyCH4IV ACGT 3 cut(s) 146, 532, 1195
HpyF10VI GCNNNNNNNGC 2 cut(s) 1007, 1016
HpyF3I CTNAG 5 cut(s) 354, 696, 901, 1176, 1434
HpySE526I ACGT 3 cut(s) 146, 532, 1195
Hsp92II CATG 9 cut(s) 560, 585, 706, 998, 1130, 1492, 1506, 1537, 1694
Kzo9I GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 1 cut(s) 652
LweI GCATC 4 cut(s) 410, 1093, 1462, 1482
MabI ACCWGGT 1 cut(s) 1204
MaeI CTAG 1 cut(s) 449
MaeII ACGT 3 cut(s) 146, 532, 1195
MaeIII GTNAC 8 cut(s) 147, 259, 314, 584, 687, 808, 860, 1454
MalI GATC 7 cut(s) 207, 321, 394, 417, 511, 933, 1191
MbiI CCGCTC 1 cut(s) 271
MboI GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
MboII GAAGA 9 cut(s) 185, 701, 713, 752, 938, 941, 1199, 1232, 1343
MflI RGATCY 2 cut(s) 509, 1189
MhlI GDGCHC 1 cut(s) 547
MlsI TGGCCA 2 cut(s) 233, 621
MluNI TGGCCA 2 cut(s) 233, 621
MlyI GAGTC 1 cut(s) 913
MnlI CCTC 9 cut(s) 67, 201, 446, 729, 1292, 1340, 1365, 1594, 1687
Mox20I TGGCCA 2 cut(s) 233, 621
MroXI GAANNNNTTC 2 cut(s) 169, 468
MscI TGGCCA 2 cut(s) 233, 621
MseI TTAA 9 cut(s) 441, 872, 953, 984, 1235, 1251, 1380, 1665, 1680
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 2 cut(s) 233, 621
MspR9I CCNGG 4 cut(s) 246, 490, 852, 1206
MvaI CCWGG 4 cut(s) 246, 490, 852, 1206
MwoI GCNNNNNNNGC 2 cut(s) 1007, 1016
NcoI CCATGG 1 cut(s) 1126
NdeI CATATG 2 cut(s) 733, 913
NdeII GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
NlaIII CATG 9 cut(s) 560, 585, 706, 998, 1130, 1492, 1506, 1537, 1694
NmuCI GTSAC 5 cut(s) 147, 314, 584, 860, 1454
NspI RCATGY 1 cut(s) 585
NspV TTCGAA 1 cut(s) 1701
PagI TCATGA 1 cut(s) 994
PaqCI CACCTGC 1 cut(s) 1166
PciI ACATGT 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 714
PdmI GAANNNNTTC 2 cut(s) 169, 468
PfeI GAWTC 9 cut(s) 678, 769, 962, 1313, 1418, 1438, 1516, 1605, 1636
PflMI CCANNNNNTGG 1 cut(s) 800
PkrI GCNGC 1 cut(s) 881
PleI GAGTC 1 cut(s) 913
PpsI GAGTC 1 cut(s) 913
Ppu21I YACGTR 1 cut(s) 1196
PscI ACATGT 1 cut(s) 581
PsiI TTATAA 1 cut(s) 1392
Psp6I CCWGG 4 cut(s) 244, 488, 850, 1204
PspFI CCCAGC 1 cut(s) 1463
PspGI CCWGG 4 cut(s) 244, 488, 850, 1204
PspPI GGNCC 1 cut(s) 1657
PsuI RGATCY 2 cut(s) 509, 1189
RsaI GTAC 6 cut(s) 49, 211, 341, 539, 701, 749
RsaNI GTAC 6 cut(s) 48, 210, 340, 538, 700, 748
RseI CAYNNNNRTG 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 9 cut(s) 441, 872, 953, 984, 1235, 1251, 1380, 1665, 1680
SatI GCNGC 1 cut(s) 880
Sau3AI GATC 7 cut(s) 205, 319, 392, 415, 509, 931, 1189
Sau96I GGNCC 1 cut(s) 1657
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 1 cut(s) 913
ScrFI CCNGG 4 cut(s) 246, 490, 852, 1206
SduI GDGCHC 1 cut(s) 547
SexAI ACCWGGT 1 cut(s) 1204
SfaNI GCATC 4 cut(s) 410, 1093, 1462, 1482
SfcI CTRYAG 1 cut(s) 671
SfuI TTCGAA 1 cut(s) 1701
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 1283
SmoI CTYRAG 1 cut(s) 1283
SsiI CCGC 3 cut(s) 24, 269, 879
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 4 cut(s) 244, 488, 850, 1204
StyI CCWWGG 2 cut(s) 764, 1126
TaaI ACNGT 6 cut(s) 47, 89, 217, 339, 542, 1330
TaiI ACGT 3 cut(s) 149, 535, 1198
TaqI TCGA 4 cut(s) 414, 1311, 1624, 1701
TatI WGTACW 3 cut(s) 47, 339, 699
TauI GCSGC 1 cut(s) 882
TfiI GAWTC 9 cut(s) 678, 769, 962, 1313, 1418, 1438, 1516, 1605, 1636
Tru1I TTAA 9 cut(s) 441, 872, 953, 984, 1235, 1251, 1380, 1665, 1680
Tru9I TTAA 9 cut(s) 441, 872, 953, 984, 1235, 1251, 1380, 1665, 1680
TscAI CASTG 3 cut(s) 220, 1078, 1323
TseFI GTSAC 5 cut(s) 147, 314, 584, 860, 1454
Tsp45I GTSAC 5 cut(s) 147, 314, 584, 860, 1454
TspRI CASTG 3 cut(s) 220, 1078, 1323
Van91I CCANNNNNTGG 1 cut(s) 800
VneI GTGCAC 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 1446
XapI RAATTY 6 cut(s) 326, 775, 837, 990, 1245, 1559
XceI RCATGY 1 cut(s) 585
XmnI GAANNNNTTC 2 cut(s) 169, 468
XspI CTAG 1 cut(s) 449
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.