Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

8872698 .. 8875378

Gene Structure 2681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAGAGAAGAGACAGTTTCTTGGAAGTACTTTAAAAGAGATGTTGTTCCGTTCACTGCGATGATCGCTATAGAGTGTACAACGGTTGGATCCAGCATACTGTATAAAGCTGCTACCTTGAGAGGATTTAGCTTTTATGTCTTTGTGTTTTACGCTTATGTTGGTGCTACACTTGTCCTTCTTCTACTTTCACTTATCTTTGGAAGGTCGAGAAGTTTGCCTACAGCCAAGTCTTCTCTTTTCTTCAAGATTTTCTTACTTGCGCTTCTCGGGCTCACGTCGCGGGTAGCTGGTTGTAAAGGTATAGAATATAGTTCCCCAACTCTTTCCTCTGCTATCAGCAATCTTACACCAGCTTTCACCTTCATCCTTGCCATCTTCTTCAGGATGGAACAAGTAATGTTAAGAAGCTCTGCAACTCAGGCTAAAATCATTGGCACAATAGTTTCTATATCTGGTGCTCTGGTTATTGTTCTGTATAAAGGCCCAAAACTTCTTGTTGCTGCATCGTTTACTTCATTCGAGTCAAGTTGGATAATTGGAGGCCTTTTGCTCGGTCTGCAGTTTTTGCTTCTTTCAGTCTGGTTTATTCTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGCCGTAGTCTTCTGCTACAACTTATGCGCAACTCTAATCTCAGGGACAGTATGTCTACTTGTAGAAAAAGACTTGAATTCTTGGCAGCTTAAACCAGGTTTCTCCCTCGCTTCAGTCATATACTCGGGACTCTTTGATACATCATTGGGCTCAGTTATCCACACATGGGGTCTCCATGTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGCTGTCTATCGCAATTGCAGTCGCCATGGCTGCTATATTCCTCGGCGACACACTTCATCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTACACTGTGATTTGGGGCAAAGCAAGAGAGGATTCAACCAAAACAGTAAGTGATTCTGAGCAATCACTTTTATTGCCTTCACACGACAGAGAAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

347

Amino Acids

38.0

Weight (kDa)

8.5

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	23 - 158	1.5e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	658
AccI	GTMKAC	2 cut(s)	685, 822
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	283, 842
AclWI	GGATC	3 cut(s)	84, 97, 925
AcsI	RAATTY	1 cut(s)	706
AcuI	CTGAAG	4 cut(s)	367, 578, 642, 726
AfaI	GTAC	2 cut(s)	29, 79
AfiI	CCNNNNNNNGG	2 cut(s)	796, 811
AgsI	TTSAA	4 cut(s)	247, 706, 838, 978
AhdI	GACNNNNNGTC	1 cut(s)	681
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	7 cut(s)	110, 132, 290, 356, 411, 718, 933
AluI	AGCT	7 cut(s)	110, 132, 290, 356, 411, 718, 933
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	5, 806
AlwI	GGATC	3 cut(s)	84, 97, 925
Ama87I	CYCGRG	2 cut(s)	269, 754
AoxI	GGCC	2 cut(s)	484, 544
ApeKI	GCWGC	4 cut(s)	110, 503, 715, 872
ApoI	RAATTY	1 cut(s)	706
AspLEI	GCGC	2 cut(s)	265, 659
AspS9I	GGNCC	2 cut(s)	485, 815
AsuHPI	GGTGA	1 cut(s)	352
AvaI	CYCGRG	2 cut(s)	269, 754
AvaII	GGWCC	1 cut(s)	815
BamHI	GGATCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	276, 782
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BbsI	GAAGAC	2 cut(s)	225, 631
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	4 cut(s)	97, 490, 727, 859
BccI	CCATC	2 cut(s)	382, 383
BceAI	ACGGC	1 cut(s)	617
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	5, 806
BfmI	CTRYAG	3 cut(s)	69, 222, 560
BisI	GCNGC	5 cut(s)	111, 504, 716, 842, 873
BlsI	GCNGC	5 cut(s)	112, 505, 717, 843, 874
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	726
Bme18I	GGWCC	1 cut(s)	815
BmeRI	GACNNNNNGTC	1 cut(s)	681
BmeT110I	CYCGRG	2 cut(s)	269, 754
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	485, 815
BmiI	GGNNCC	2 cut(s)	91, 816
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	1 cut(s)	515
BpiI	GAAGAC	2 cut(s)	225, 631
BpuEI	CTTGAG	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	867, 883
Bsc4I	CCNNNNNNNGG	2 cut(s)	796, 811
Bse1I	ACTGG	1 cut(s)	818
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	867, 883
BseGI	GGATG	2 cut(s)	366, 393
BseLI	CCNNNNNNNGG	2 cut(s)	796, 811
BseMII	CTCAG	4 cut(s)	434, 684, 795, 990
BseNI	ACTGG	1 cut(s)	818
BseXI	GCAGC	4 cut(s)	97, 490, 727, 859
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	2 cut(s)	486, 546
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	2 cut(s)	269, 754
BslFI	GGGAC	2 cut(s)	688, 771
BslI	CCNNNNNNNGG	2 cut(s)	796, 811
BsmAI	GTCTC	2 cut(s)	5, 806
BsmFI	GGGAC	2 cut(s)	688, 771
BsnI	GGCC	2 cut(s)	486, 546
Bso31I	GGTCTC	1 cut(s)	806
BsoBI	CYCGRG	2 cut(s)	269, 754
Bsp1286I	GDGCHC	3 cut(s)	276, 463, 782
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	63, 89, 917
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	2 cut(s)	283, 842
BspANI	GGCC	2 cut(s)	486, 546
BspCNI	CTCAG	4 cut(s)	433, 683, 794, 991
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	91, 816
BspMAI	CTGCAG	1 cut(s)	564
BspPI	GGATC	3 cut(s)	84, 97, 925
BspTNI	GGTCTC	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	818
BssECI	CCNNGG	2 cut(s)	867, 883
BssMI	GATC	3 cut(s)	63, 89, 917
BssT1I	CCWWGG	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	6 cut(s)	16, 85, 102, 679, 949, 988
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstAUI	TGTACA	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	420, 670, 781, 999
BstDSI	CCRYGG	1 cut(s)	867
BstF5I	GGATG	2 cut(s)	366, 393
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	2 cut(s)	265, 659
BstKTI	GATC	3 cut(s)	66, 92, 920
BstMAI	GTCTC	2 cut(s)	5, 806
BstMBI	GATC	3 cut(s)	63, 89, 917
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 271, 280, 422, 559, 568, 872
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	3 cut(s)	69, 222, 560
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	4 cut(s)	97, 490, 727, 859
BstV2I	GAAGAC	2 cut(s)	225, 631
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	486, 546
BtgI	CCRYGG	1 cut(s)	867
BtgZI	GCGATG	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	366, 393
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 927, 945
CfoI	GCGC	2 cut(s)	265, 659
Cfr13I	GGNCC	2 cut(s)	485, 815
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	28, 78
CviAII	CATG	4 cut(s)	607, 795, 806, 868
CviQI	GTAC	2 cut(s)	28, 78
DdeI	CTNAG	4 cut(s)	420, 670, 781, 999
DpnI	GATC	3 cut(s)	65, 91, 919
DpnII	GATC	3 cut(s)	63, 89, 917
DraI	TTTAAA	1 cut(s)	34
DriI	GACNNNNNGTC	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	276, 782
Eco31I	GGTCTC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	4 cut(s)	367, 578, 642, 726
Eco88I	CYCGRG	2 cut(s)	269, 754
EcoRI	GAATTC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	867
EcoT38I	GRGCYC	2 cut(s)	276, 782
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	4 cut(s)	610, 798, 809, 871
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	688, 771
FatI	CATG	4 cut(s)	606, 794, 805, 867
FauI	CCCGC	1 cut(s)	276
FblI	GTMKAC	2 cut(s)	685, 822
Fnu4HI	GCNGC	5 cut(s)	111, 504, 716, 842, 873
FokI	GGATG	2 cut(s)	353, 400
FriOI	GRGCYC	2 cut(s)	276, 782
Fsp4HI	GCNGC	5 cut(s)	111, 504, 716, 842, 873
FspI	TGCGCA	1 cut(s)	658
GlaI	GCGC	2 cut(s)	264, 658
GluI	GCNGC	5 cut(s)	111, 504, 716, 842, 873
HaeIII	GGCC	2 cut(s)	486, 546
HhaI	GCGC	2 cut(s)	265, 659
Hin1II	CATG	4 cut(s)	610, 798, 809, 871
Hin6I	GCGC	2 cut(s)	263, 657
HinP1I	GCGC	2 cut(s)	263, 657
HinfI	GANTC	5 cut(s)	524, 598, 759, 974, 995
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	5 cut(s)	54, 78, 513, 686, 823
Hpy188I	TCNGA	2 cut(s)	597, 1000
Hpy188III	TCNNGA	4 cut(s)	210, 247, 385, 756
Hpy8I	GTNNAC	5 cut(s)	54, 78, 513, 686, 823
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	5 cut(s)	188, 198, 373, 805, 1029
HpyCH4III	ACNGT	6 cut(s)	16, 85, 102, 679, 949, 988
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	416, 506, 562, 860
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 271, 280, 422, 559, 568, 872
HpyF3I	CTNAG	4 cut(s)	420, 670, 781, 999
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	610, 798, 809, 871
HspAI	GCGC	2 cut(s)	263, 657
Kzo9I	GATC	3 cut(s)	63, 89, 917
Lsp1109I	GCAGC	4 cut(s)	97, 490, 727, 859
LweI	GCATC	1 cut(s)	515
MabI	ACCWGGT	1 cut(s)	724
MaeII	ACGT	1 cut(s)	278
MalI	GATC	3 cut(s)	65, 91, 919
MboI	GATC	3 cut(s)	63, 89, 917
MboII	GAAGA	9 cut(s)	20, 173, 225, 235, 370, 373, 584, 631, 635
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	3 cut(s)	276, 463, 782
MluCI	AATT	3 cut(s)	537, 706, 855
MlyI	GAGTC	3 cut(s)	533, 592, 753
MmeI	TCCRAC	2 cut(s)	67, 512
MnlI	CCTC	6 cut(s)	116, 340, 536, 746, 893, 964
MseI	TTAA	3 cut(s)	33, 404, 720
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	844
MspR9I	CCNGG	1 cut(s)	726
MunI	CAATTG	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	7 cut(s)	65, 271, 280, 422, 559, 568, 872
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	3 cut(s)	63, 89, 917
NlaIII	CATG	4 cut(s)	610, 798, 809, 871
NlaIV	GGNNCC	2 cut(s)	91, 816
NmeAIII	GCCGAG	1 cut(s)	864
NsbI	TGCGCA	1 cut(s)	658
PceI	AGGCCT	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	974, 995
PkrI	GCNGC	5 cut(s)	112, 505, 717, 843, 874
PleI	GAGTC	3 cut(s)	532, 592, 753
PpsI	GAGTC	3 cut(s)	532, 592, 753
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	91, 816
PspPI	GGNCC	2 cut(s)	485, 815
PstI	CTGCAG	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	2 cut(s)	29, 79
RsaNI	GTAC	2 cut(s)	28, 78
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	33, 404, 720
SatI	GCNGC	5 cut(s)	111, 504, 716, 842, 873
Sau3AI	GATC	3 cut(s)	63, 89, 917
Sau96I	GGNCC	2 cut(s)	485, 815
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	3 cut(s)	533, 592, 753
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	3 cut(s)	276, 463, 782
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	1 cut(s)	515
SfcI	CTRYAG	3 cut(s)	69, 222, 560
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	537, 706, 855
SseBI	AGGCCT	1 cut(s)	546
SsiI	CCGC	2 cut(s)	283, 842
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	6 cut(s)	16, 85, 102, 679, 949, 988
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	209, 522
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	537, 706, 855
TatI	WGTACW	2 cut(s)	27, 77
TauI	GCSGC	1 cut(s)	844
TfiI	GAWTC	2 cut(s)	974, 995
Tru1I	TTAA	3 cut(s)	33, 404, 720
Tru9I	TTAA	3 cut(s)	33, 404, 720
TscAI	CASTG	3 cut(s)	61, 927, 952
TseI	GCWGC	4 cut(s)	110, 503, 715, 872
TspDTI	ATGAA	3 cut(s)	355, 507, 887
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	3 cut(s)	61, 927, 952
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	1 cut(s)	706
XmiI	GTMKAC	2 cut(s)	685, 822
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.