Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

16079648 .. 16081893

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGACAAGAGGAGCAGGAGGGGAGACAGTGGCATGGAGTTACTTTTGCAGAGATGTTGTGCCGTTCACTGCAATGGTCGCGGTGGAGTGTGTTACGGTTGGATCTAATACACTGTTCAAGGCTGCGACATTGCGAGGATTGAGCTTCTATGTCTTTGTCTTCTATACCTATGTTGTTGCTACACTTGTTCTTCTTCCACTTTCCCTCATTTTTGGAAGGTCAAAACGATTACCTTCTGCCAAGACCCCTGTCTTCTTCAATATTTTCTTACTTGCGCTTGTTGGGTTCATGTCTCTGATAGTTGGTTGTAAAGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTGACACCAGCTTTCACATTTACGCTCGCCGTTATCTTCAGAATGGAACAAATAGTCTTAAGGAGCTCCGCGACTCAGGCCAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTTGTTATTCTTTATAAAGGCCCTAAAGTTCTAACTGATGCATCTCTTACACCTCCATCACCTACCATTTCGCTTTACCAGCATTTGACTTCATTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGCTACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATGGAGTTATACCCTGAAGAAATAACTGTAGTATTCTTGTATAACTTATGCGCTACGCTTATCTCGGCACCAGTATGTCTATTTGCGGAAAAAGACTTGAATTCTTTTATACTTAAACCGGGTGTCTCCCTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTATACACACTTGGGGTCTGCATCTTAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGTCATTGCGGTCGCTATGGGTGTTATGTTCCTCGGCGATGCACTTTACCTTGGGAGTGTCATTGGATCATTGATTTTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATTCAATCAAAACTGTGGCTGGTACTGAGCAGTCCCCTTTGTTGCCTTCACACACCATAGAAGAAGAAGCCTCATTAAGCTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

370

Amino Acids

39.95

Weight (kDa)

8.14

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	26 - 162	1.2e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	2 cut(s)	80, 428
AciI	CCGC	4 cut(s)	80, 426, 743, 911
AclWI	GGATC	2 cut(s)	109, 976
AcsI	RAATTY	1 cut(s)	757
AcuI	CTGAAG	4 cut(s)	379, 629, 693, 777
AfaI	GTAC	2 cut(s)	803, 1048
AflII	CTTAAG	2 cut(s)	415, 860
AgsI	TTSAA	5 cut(s)	118, 259, 757, 889, 1029
AluBI	AGCT	5 cut(s)	144, 368, 423, 984, 1104
AluI	AGCT	5 cut(s)	144, 368, 423, 984, 1104
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	3 cut(s)	17, 297, 787
AlwI	GGATC	2 cut(s)	109, 976
Ama87I	CYCGRG	2 cut(s)	651, 805
AoxI	GGCC	2 cut(s)	435, 496
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	757
AspLEI	GCGC	2 cut(s)	277, 710
AspS9I	GGNCC	2 cut(s)	497, 866
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	2 cut(s)	321, 528
AvaI	CYCGRG	2 cut(s)	651, 805
AvaII	GGWCC	1 cut(s)	866
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BanI	GGYRCC	1 cut(s)	724
BanII	GRGCYC	1 cut(s)	425
BbsI	GAAGAC	2 cut(s)	151, 244
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	3 cut(s)	46, 371, 877
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	3 cut(s)	17, 297, 787
BfmI	CTRYAG	1 cut(s)	684
BfrI	CTTAAG	2 cut(s)	415, 860
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	777
Bme18I	GGWCC	1 cut(s)	866
BmeT110I	CYCGRG	2 cut(s)	651, 805
BmgT120I	GGNCC	2 cut(s)	497, 866
BmiI	GGNNCC	2 cut(s)	726, 867
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	4 cut(s)	505, 527, 865, 931
BoxI	GACNNNNGTC	2 cut(s)	248, 653
BpiI	GAAGAC	2 cut(s)	151, 244
Bpu10I	CCTNAGC	1 cut(s)	985
BpuMI	CCSGG	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	934, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	801, 831
Bse1I	ACTGG	2 cut(s)	728, 869
Bse3DI	GCAATG	3 cut(s)	78, 128, 906
BseDI	CCNNGG	2 cut(s)	934, 952
BseMI	GCAATG	3 cut(s)	78, 128, 906
BseMII	CTCAG	3 cut(s)	446, 846, 1041
BseNI	ACTGG	2 cut(s)	728, 869
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	109
Bsh1236I	CGCG	2 cut(s)	80, 428
Bsh1285I	CGRYCG	1 cut(s)	915
BshFI	GGCC	2 cut(s)	437, 498
BshNI	GGYRCC	1 cut(s)	724
BsiEI	CGRYCG	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	425
BsiHKCI	CYCGRG	2 cut(s)	651, 805
BsiSI	CCGG	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	1042
BsmAI	GTCTC	3 cut(s)	17, 297, 787
BsmFI	GGGAC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	437, 498
BsoBI	CYCGRG	2 cut(s)	651, 805
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	101, 968
BspACI	CCGC	4 cut(s)	80, 426, 743, 911
BspANI	GGCC	2 cut(s)	437, 498
BspCNI	CTCAG	3 cut(s)	445, 845, 1042
BspFNI	CGCG	2 cut(s)	80, 428
BspLI	GGNNCC	2 cut(s)	726, 867
BspPI	GGATC	2 cut(s)	109, 976
BspT107I	GGYRCC	1 cut(s)	724
BspTI	CTTAAG	2 cut(s)	415, 860
BsrDI	GCAATG	3 cut(s)	78, 128, 906
BsrI	ACTGG	2 cut(s)	728, 869
BssECI	CCNNGG	2 cut(s)	934, 952
BssMI	GATC	2 cut(s)	101, 968
BssT1I	CCWWGG	1 cut(s)	952
Bst4CI	ACNGT	7 cut(s)	28, 97, 114, 615, 685, 1000, 1039
BstAFI	CTTAAG	2 cut(s)	415, 860
BstC8I	GCNNGC	2 cut(s)	384, 606
BstDEI	CTNAG	5 cut(s)	432, 814, 832, 985, 1050
BstFNI	CGCG	2 cut(s)	80, 428
BstHHI	GCGC	2 cut(s)	277, 710
BstKTI	GATC	2 cut(s)	104, 971
BstMAI	GTCTC	3 cut(s)	17, 297, 787
BstMBI	GATC	2 cut(s)	101, 968
BstMCI	CGRYCG	1 cut(s)	915
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 434, 556
BstPAI	GACNNNNGTC	2 cut(s)	248, 653
BstSCI	CCNGG	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	2 cut(s)	80, 428
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	2 cut(s)	151, 244
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	437, 498
BtgZI	GCGATG	1 cut(s)	954
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	4 cut(s)	33, 66, 110, 996
Cac8I	GCNNGC	2 cut(s)	384, 606
CfoI	GCGC	2 cut(s)	277, 710
Cfr13I	GGNCC	2 cut(s)	497, 866
Csp6I	GTAC	2 cut(s)	802, 1047
CviAII	CATG	4 cut(s)	33, 289, 658, 799
CviQI	GTAC	2 cut(s)	802, 1047
DdeI	CTNAG	5 cut(s)	432, 814, 832, 985, 1050
DpnI	GATC	2 cut(s)	103, 970
DpnII	GATC	2 cut(s)	101, 968
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	952
Eco24I	GRGCYC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	866
Eco53kI	GAGCTC	1 cut(s)	423
Eco57I	CTGAAG	4 cut(s)	379, 629, 693, 777
Eco88I	CYCGRG	2 cut(s)	651, 805
EcoICRI	GAGCTC	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	952
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	952
FaeI	CATG	4 cut(s)	36, 292, 661, 802
FaqI	GGGAC	1 cut(s)	1042
FatI	CATG	4 cut(s)	32, 288, 657, 798
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	2 cut(s)	276, 709
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	437, 498
HapII	CCGG	1 cut(s)	776
HhaI	GCGC	2 cut(s)	277, 710
Hin1II	CATG	4 cut(s)	36, 292, 661, 802
Hin6I	GCGC	2 cut(s)	275, 708
HinP1I	GCGC	2 cut(s)	275, 708
HinfI	GANTC	5 cut(s)	430, 575, 649, 990, 1025
HpaII	CCGG	1 cut(s)	776
HphI	GGTGA	2 cut(s)	321, 528
Hpy166II	GTNNAC	3 cut(s)	66, 329, 874
Hpy188I	TCNGA	5 cut(s)	297, 360, 398, 593, 648
Hpy188III	TCNNGA	1 cut(s)	807
Hpy8I	GTNNAC	3 cut(s)	66, 329, 874
HpyAV	CCTTC	3 cut(s)	210, 243, 1080
HpyCH4III	ACNGT	7 cut(s)	28, 97, 114, 615, 685, 1000, 1039
HpyCH4V	TGCA	5 cut(s)	48, 71, 518, 856, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 434, 556
HpyF3I	CTNAG	5 cut(s)	432, 814, 832, 985, 1050
Hsp92II	CATG	4 cut(s)	36, 292, 661, 802
HspAI	GCGC	2 cut(s)	275, 708
Kzo9I	GATC	2 cut(s)	101, 968
LmnI	GCTCC	3 cut(s)	11, 420, 428
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	4 cut(s)	505, 527, 865, 931
MaeIII	GTNAC	3 cut(s)	38, 91, 1106
MalI	GATC	2 cut(s)	103, 970
MboI	GATC	2 cut(s)	101, 968
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	1 cut(s)	757
MlyI	GAGTC	2 cut(s)	424, 643
MmeI	TCCRAC	2 cut(s)	79, 563
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	4 cut(s)	416, 771, 861, 1100
MslI	CAYNNNNRTG	2 cut(s)	71, 730
MspCI	CTTAAG	2 cut(s)	415, 860
MspI	CCGG	1 cut(s)	776
MspR9I	CCNGG	1 cut(s)	777
MvnI	CGCG	2 cut(s)	80, 428
MwoI	GCNNNNNNNGC	3 cut(s)	77, 434, 556
NciI	CCSGG	1 cut(s)	777
NdeII	GATC	2 cut(s)	101, 968
NlaIII	CATG	4 cut(s)	36, 292, 661, 802
NlaIV	GGNNCC	2 cut(s)	726, 867
NmeAIII	GCCGAG	2 cut(s)	701, 915
NmuCI	GTSAC	1 cut(s)	1106
NsiI	ATGCAT	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	575, 990, 1025
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	424, 643
PpsI	GAGTC	2 cut(s)	424, 643
PshAI	GACNNNNGTC	2 cut(s)	248, 653
PsiI	TTATAA	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	726, 867
PspPI	GGNCC	2 cut(s)	497, 866
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	2 cut(s)	803, 1048
RsaNI	GTAC	2 cut(s)	802, 1047
RseI	CAYNNNNRTG	2 cut(s)	71, 730
SacI	GAGCTC	1 cut(s)	425
SaqAI	TTAA	4 cut(s)	416, 771, 861, 1100
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	101, 968
Sau96I	GGNCC	2 cut(s)	497, 866
SchI	GAGTC	2 cut(s)	424, 643
ScrFI	CCNGG	1 cut(s)	777
SduI	GDGCHC	1 cut(s)	425
SfaNI	GCATC	4 cut(s)	505, 527, 865, 931
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	866
SmiMI	CAYNNNNRTG	2 cut(s)	71, 730
SmlI	CTYRAG	2 cut(s)	415, 860
SmoI	CTYRAG	2 cut(s)	415, 860
Sse9I	AATT	1 cut(s)	757
SsiI	CCGC	4 cut(s)	80, 426, 743, 911
SspI	AATATT	1 cut(s)	262
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	775
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	7 cut(s)	28, 97, 114, 615, 685, 1000, 1039
TaqI	TCGA	1 cut(s)	578
TasI	AATT	1 cut(s)	757
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	3 cut(s)	575, 990, 1025
Tru1I	TTAA	4 cut(s)	416, 771, 861, 1100
Tru9I	TTAA	4 cut(s)	416, 771, 861, 1100
TscAI	CASTG	4 cut(s)	33, 73, 117, 1003
TseFI	GTSAC	1 cut(s)	1106
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	3 cut(s)	277, 558, 810
TspRI	CASTG	4 cut(s)	33, 73, 117, 1003
Vha464I	CTTAAG	2 cut(s)	415, 860
VpaK11BI	GGWCC	1 cut(s)	866
XapI	RAATTY	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	873
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.