Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

25092960 .. 25093334

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAGGGAGGTCTTGTTACAGGGACGGGTTGCCCTTTGCAGCCATGATTACAGTGGAGAGCACCAACGTCGGCTTAAACATCTTATTCAAGTCAGCAACCTCAAAAGGGTTGAGTTTCTATGTATTCATTGTCTACTCCTACGCATTTGCCACTGTTCTTCTCCTCCCTCTTCCTTTCATTTTTCCCAGAACGAGGCTTCCTCCATTGAACTTCTCTCTTCTCTTTAAAGCTTTCCTCCTTGGACTGATCGGGTTTGTGGCAAATATATGTGCATATAAAGGTATAGATTACAGTTCACCAACTCTTGCTTCAGCTGTGAGCAACCTCACTCCGGCTTTTACATTCATACTCGCCGTCATCTTCAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

9.7

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 122	9.9e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AcuI	CTGAAG	2 cut(s)	297, 349
AfiI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
AgsI	TTSAA	2 cut(s)	91, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	2 cut(s)	233, 317
AluI	AGCT	2 cut(s)	233, 317
Alw21I	GWGCWC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 195, 334
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
BsmFI	GGGAC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	249, 369
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	249, 369
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	55, 157, 296
Bst6I	CTCTTC	2 cut(s)	177, 225
BstKTI	GATC	2 cut(s)	252, 372
BstMBI	GATC	2 cut(s)	249, 369
BstV1I	GCAGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	60, 153
CaiI	CAGNNNCTG	1 cut(s)	372
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	6 cut(s)	44, 75, 199, 233, 317, 338
CviKI_1	RGCY	6 cut(s)	44, 75, 199, 233, 317, 338
DpnI	GATC	2 cut(s)	251, 371
DpnII	GATC	2 cut(s)	249, 369
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	177, 225
EarI	CTCTTC	2 cut(s)	177, 225
Eco130I	CCWWGG	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	297, 349
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	49
FaiI	YATR	8 cut(s)	47, 123, 269, 271, 277, 279, 287, 350
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	231
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	136, 299
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	2 cut(s)	136, 299
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4III	ACNGT	3 cut(s)	55, 157, 296
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	41, 275
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	249, 369
LpnPI	CCDG	4 cut(s)	7, 202, 348, 352
Lsp1109I	GCAGC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	251, 371
MboI	GATC	2 cut(s)	249, 369
MboII	GAAGA	4 cut(s)	152, 164, 212, 355
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	3, 112, 176, 180, 189, 213, 248, 338
MseI	TTAA	2 cut(s)	77, 228
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	335
NdeII	GATC	2 cut(s)	249, 369
NlaIII	CATG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	77, 228
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	249, 369
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	7 cut(s)	14, 72, 104, 235, 286, 319, 330
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	55, 157, 296
TaiI	ACGT	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	77, 228
Tru9I	TTAA	2 cut(s)	77, 228
TscAI	CASTG	2 cut(s)	60, 160
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	118, 169, 337
TspRI	CASTG	2 cut(s)	60, 160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.