Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

79329298 .. 79338967

Gene Structure 9670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCAGGGAGGTCTTGTTACAGAGATGTGTTGCCCTTTGCAGCCATGGTTACAGTGGAGAGCACCAACGTCGGCTTAAACATCTTGTTCAAGTCAGCAACCACAAAAGGGTTGAGTTACTATGTGTTCATTGTCTACTCTTATGCTTTTGCCACTGTTCTTCTCCTCCCTCTTCCTTTCATTTTTCCCAGCAGAACAAGGCTTCCTCCATTGAACTTCTCTCTTCTCTTCAAAGCTTTCCTCCTTGGACTGATCGGGTTTGTGGCAAATATTTGTGCATATAAAGGTATAGATTACAGTTCACCAACTCTTGCTTCAGCTATGAGCAACCTCACTCCGGCTTTTACATTCATACTTGCCGTCATCTTCAGGATGGAAAGGCTGAGTTTGAGAAGCACCAACACTCGAGCCAAAGTCATGGGTACTATACTGTCAGTATCAGGTGCTCTTGTAGTGGTTCTCTGTAAGGGCCCAACAGTTCTATCCAGTACGTCAGAGAGAGATTGGGTAAAAGGTGGCCTATTGCTCACTGTCGGGTACCTTCTGTTCTCTGCCTGGTCTATACTTCAGACTCATATCATGAAGACATACCCGGTTGAGCTAGTTTGGGCATTGTTATACAACTTGTTTGGAACCATTATATCAGCACCAGTCTGTTTATTCATAGCCGAAACAAACTTAAGTGCCTGGAGACTACGGCCTGGCGTAGCATTGATTGCCATTATATACTCGGGGCTCGTTATTTTAGCGTTCAGCACCATTGTTTCGACATGGAGCCTAAACTTGAAGGGTCCTGTGTATGTGTCAATCTTCAAGCCATTGTCGATTGGCATTGCTTCCGCATCCAGTGTCATATTCCTAGGCGATGATCTCTTTCTCGGCAGTGTTTTTGGAGCTGTAATGATATCCATAGGGTTTTATGGTGTAATATGGGGACAGGCAAAGGAAGAAGAAATGAGAGATCAAGACTATGAGTTTGATAGCTTGACAGGGTTACATAACGGTAAGGCACCATTATTGGAAACCTACAAAGTTGAAAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

348

Amino Acids

38.03

Weight (kDa)

9.06

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 153	1.4e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	2 cut(s)	537, 1009
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	840
AcuI	CTGAAG	3 cut(s)	300, 352, 551
AfaI	GTAC	3 cut(s)	424, 490, 539
AfiI	CCNNNNNNNGG	2 cut(s)	108, 337
AflII	CTTAAG	1 cut(s)	679
AgsI	TTSAA	6 cut(s)	91, 214, 232, 787, 814, 1037
AjnI	CCWGG	3 cut(s)	554, 686, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	5 cut(s)	236, 320, 601, 896, 984
AluI	AGCT	5 cut(s)	236, 320, 601, 896, 984
Alw21I	GWGCWC	2 cut(s)	65, 448
Alw26I	GTCTC	1 cut(s)	685
Ama87I	CYCGRG	2 cut(s)	405, 730
AoxI	GGCC	3 cut(s)	469, 517, 698
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	959, 991
Asp718I	GGTACC	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	859
AspS9I	GGNCC	3 cut(s)	469, 470, 791
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	294
AvaI	CYCGRG	2 cut(s)	405, 730
AvaII	GGWCC	1 cut(s)	791
AvrII	CCTAGG	1 cut(s)	859
BaeGI	GKGCMC	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	537, 1009
BanII	GRGCYC	2 cut(s)	473, 738
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	2 cut(s)	65, 448
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	344, 713
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	3 cut(s)	556, 688, 702
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	2 cut(s)	602, 860
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	1 cut(s)	42
BlnI	CCTAGG	1 cut(s)	859
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	4 cut(s)	556, 593, 688, 702
Bme18I	GGWCC	1 cut(s)	791
BmeT110I	CYCGRG	2 cut(s)	405, 730
BmgT120I	GGNCC	3 cut(s)	469, 470, 791
BmiI	GGNNCC	6 cut(s)	471, 539, 634, 776, 792, 1011
BmrFI	CCNGG	4 cut(s)	556, 593, 688, 702
BmsI	GCATC	1 cut(s)	851
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	709
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	45, 244, 859
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 337
Bse1I	ACTGG	3 cut(s)	486, 650, 846
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	3 cut(s)	556, 688, 702
BseDI	CCNNGG	3 cut(s)	45, 244, 859
BseGI	GGATG	2 cut(s)	378, 842
BseLI	CCNNNNNNNGG	2 cut(s)	108, 337
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	3 cut(s)	486, 650, 846
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	3 cut(s)	471, 519, 700
BshNI	GGYRCC	2 cut(s)	537, 1009
BsiHKAI	GWGCWC	2 cut(s)	65, 448
BsiHKCI	CYCGRG	2 cut(s)	405, 730
BsiSI	CCGG	2 cut(s)	338, 593
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	2 cut(s)	108, 337
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	948
BsnI	GGCC	3 cut(s)	471, 519, 700
BsoBI	CYCGRG	2 cut(s)	405, 730
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	4 cut(s)	65, 448, 473, 738
Bsp143I	GATC	3 cut(s)	252, 868, 961
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	840
BspANI	GGCC	3 cut(s)	471, 519, 700
BspCNI	CTCAG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	6 cut(s)	471, 539, 634, 776, 792, 1011
BspT107I	GGYRCC	2 cut(s)	537, 1009
BspTI	CTTAAG	1 cut(s)	679
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	3 cut(s)	486, 650, 846
BssECI	CCNNGG	3 cut(s)	45, 244, 859
BssMI	GATC	3 cut(s)	252, 868, 961
BssT1I	CCWWGG	3 cut(s)	45, 244, 859
Bst2UI	CCWGG	3 cut(s)	556, 688, 702
Bst4CI	ACNGT	7 cut(s)	55, 157, 299, 432, 478, 532, 1004
Bst6I	CTCTTC	3 cut(s)	177, 228, 233
BstAFI	CTTAAG	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	378, 842
BstKTI	GATC	3 cut(s)	255, 871, 964
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	3 cut(s)	252, 868, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstNI	CCWGG	3 cut(s)	556, 688, 702
BstSCI	CCNGG	4 cut(s)	554, 591, 686, 700
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	590
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	471, 519, 700
BtgI	CCRYGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	879
BtsCI	GGATG	2 cut(s)	378, 842
BtsI	GCAGTG	1 cut(s)	889
BtsIMutI	CAGTG	5 cut(s)	60, 153, 528, 853, 889
CciI	TCATGA	1 cut(s)	579
Cfr13I	GGNCC	3 cut(s)	469, 470, 791
Csp6I	GTAC	3 cut(s)	423, 489, 538
CviAII	CATG	4 cut(s)	46, 418, 580, 771
CviQI	GTAC	3 cut(s)	423, 489, 538
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	3 cut(s)	254, 870, 963
DpnII	GATC	3 cut(s)	252, 868, 961
Eam1104I	CTCTTC	3 cut(s)	177, 228, 233
EarI	CTCTTC	3 cut(s)	177, 228, 233
Eco130I	CCWWGG	3 cut(s)	45, 244, 859
Eco24I	GRGCYC	2 cut(s)	473, 738
Eco32I	GATATC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	791
Eco57I	CTGAAG	3 cut(s)	300, 352, 551
Eco88I	CYCGRG	2 cut(s)	405, 730
EcoO109I	RGGNCCY	2 cut(s)	469, 791
EcoRII	CCWGG	3 cut(s)	554, 686, 700
EcoRV	GATATC	1 cut(s)	906
EcoT14I	CCWWGG	3 cut(s)	45, 244, 859
EcoT38I	GRGCYC	2 cut(s)	473, 738
ErhI	CCWWGG	3 cut(s)	45, 244, 859
FaeI	CATG	4 cut(s)	49, 421, 583, 774
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	4 cut(s)	45, 417, 579, 770
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	385, 829
FriOI	GRGCYC	2 cut(s)	473, 738
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	602, 860
GluI	GCNGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	709
HaeIII	GGCC	3 cut(s)	471, 519, 700
HapII	CCGG	2 cut(s)	338, 593
Hin1II	CATG	4 cut(s)	49, 421, 583, 774
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	338, 593
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	2 cut(s)	136, 302
Hpy188I	TCNGA	2 cut(s)	496, 570
Hpy188III	TCNNGA	3 cut(s)	370, 580, 965
Hpy8I	GTNNAC	2 cut(s)	136, 302
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	551, 781
HpyCH4III	ACNGT	7 cut(s)	55, 157, 299, 432, 478, 532, 1004
HpyCH4IV	ACGT	2 cut(s)	69, 491
HpyCH4V	TGCA	2 cut(s)	41, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	69, 491
Hsp92II	CATG	4 cut(s)	49, 421, 583, 774
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	252, 868, 961
LmnI	GCTCC	2 cut(s)	774, 893
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	851
MaeI	CTAG	2 cut(s)	602, 860
MaeII	ACGT	2 cut(s)	69, 491
MaeIII	GTNAC	4 cut(s)	17, 49, 116, 993
MalI	GATC	3 cut(s)	254, 870, 963
MboI	GATC	3 cut(s)	252, 868, 961
MboII	GAAGA	9 cut(s)	152, 164, 215, 220, 358, 595, 802, 959, 962
MhlI	GDGCHC	4 cut(s)	65, 448, 473, 738
MlyI	GAGTC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	3, 176, 180, 216, 251, 341
MseI	TTAA	2 cut(s)	77, 680
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	2 cut(s)	338, 593
MspR9I	CCNGG	4 cut(s)	556, 593, 688, 702
MvaI	CCWGG	3 cut(s)	556, 688, 702
MwoI	GCNNNNNNNGC	1 cut(s)	716
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	252, 868, 961
NlaIII	CATG	4 cut(s)	49, 421, 583, 774
NlaIV	GGNNCC	6 cut(s)	471, 539, 634, 776, 792, 1011
NmeAIII	GCCGAG	1 cut(s)	858
PaeR7I	CTCGAG	1 cut(s)	405
PagI	TCATGA	1 cut(s)	579
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	3 cut(s)	554, 686, 700
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	3 cut(s)	554, 686, 700
PspN4I	GGNNCC	6 cut(s)	471, 539, 634, 776, 792, 1011
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	469, 470, 791
PspPPI	RGGWCCY	1 cut(s)	791
PspXI	VCTCGAGB	1 cut(s)	405
PsrI	GAACNNNNNNTAC	2 cut(s)	530, 562
RsaI	GTAC	3 cut(s)	424, 490, 539
RsaNI	GTAC	3 cut(s)	423, 489, 538
SaqAI	TTAA	2 cut(s)	77, 680
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	252, 868, 961
Sau96I	GGNCC	3 cut(s)	469, 470, 791
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	4 cut(s)	556, 593, 688, 702
SduI	GDGCHC	4 cut(s)	65, 448, 473, 738
SfaNI	GCATC	1 cut(s)	851
Sfr274I	CTCGAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	791
SlaI	CTCGAG	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	405, 679
SmoI	CTYRAG	2 cut(s)	405, 679
SsiI	CCGC	1 cut(s)	840
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	602, 860
StyD4I	CCNGG	4 cut(s)	554, 591, 686, 700
StyI	CCWWGG	3 cut(s)	45, 244, 859
TaaI	ACNGT	7 cut(s)	55, 157, 299, 432, 478, 532, 1004
TaiI	ACGT	2 cut(s)	72, 494
TaqI	TCGA	3 cut(s)	406, 767, 824
Tru1I	TTAA	2 cut(s)	77, 680
Tru9I	TTAA	2 cut(s)	77, 680
TscAI	CASTG	5 cut(s)	60, 160, 535, 853, 889
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	5 cut(s)	118, 169, 340, 596, 652
TspRI	CASTG	5 cut(s)	60, 160, 535, 853, 889
Vha464I	CTTAAG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	405
XmaJI	CCTAGG	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	602, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.