Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

85610930 .. 85611980

Gene Structure 1051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG634400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAGGGGTGACTTTGAGAAGCAGTAGCTCTCAAGCCAAATTCATGGGTACTTTAGCCTCAATATCAGGTGCAATGATAGTGGTACTCTATAAGGGTCCAACAATTTTATCTATTACAACAGAAAAGGATTGGATAGAAGGTGGCCTATTACTTACTGTTGGGTACCTTCTATTCTCAGCCTGGTGTATCCTTCAGACACATATCATGAAGATACACCAGGTTGAGCTAGTTCTGGCCTTCTTATACAACTTGTGTGGCACAATTATATTGGCACCAGTATGTTTCTTAGCTGAAAGAAACTTGAGTGCCTGGAGACCACGACCTGTTATTCCGTTGCTTGCCATTATCTACTCGGGAGTATTTGGTTCATCCGTCAGCATTCTAGTTCACATATGGGGCCTGCACTTGAAGGGTCCTGTTTATATTTCGAGCTTCAAGCCATTTTCAATTGCAATTGCTGCTGCTTTCGGTGTCATATTCCTTGGTGATGGTCTCTCTCTTGGCAGTGTTGTTGGAGCTGCAACGCTATCAATAGGTTTTTGTGCAGTAATTTGGGGAAAGGGAAAAGAAGAAGAAATTAGTGAAGACTGTGGCTTTGATAGCTTGAGAGGCTTACCTATTGGTAAGGCACCTTTGTTAGAAAGCTACAAAGTTGAAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

222

Amino Acids

23.8

Weight (kDa)

6.89

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	49 - 184	1.9e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	3 cut(s)	165, 274, 631
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	3 cut(s)	52, 87, 167
AgsI	TTSAA	4 cut(s)	412, 439, 450, 659
AjnI	CCWGG	3 cut(s)	182, 219, 311
AluBI	AGCT	8 cut(s)	30, 229, 293, 435, 521, 606, 648, 662
AluI	AGCT	8 cut(s)	30, 229, 293, 435, 521, 606, 648, 662
Alw26I	GTCTC	2 cut(s)	310, 500
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	3 cut(s)	145, 237, 400
ApeKI	GCWGC	3 cut(s)	461, 464, 521
ApoI	RAATTY	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
Asp718I	GGTACC	1 cut(s)	165
AspS9I	GGNCC	3 cut(s)	98, 400, 416
AsuHPI	GGTGA	2 cut(s)	22, 500
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	98, 416
BanI	GGYRCC	3 cut(s)	165, 274, 631
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	3 cut(s)	448, 451, 508
BccI	CCATC	1 cut(s)	485
BciT130I	CCWGG	3 cut(s)	184, 221, 313
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	310, 500
BfaI	CTAG	2 cut(s)	230, 386
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	462, 465, 522
BlsI	GCNGC	3 cut(s)	463, 466, 523
Bme1390I	CCNGG	3 cut(s)	184, 221, 313
Bme18I	GGWCC	2 cut(s)	98, 416
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	98, 400, 416
BmiI	GGNNCC	6 cut(s)	99, 167, 276, 401, 417, 633
BmrFI	CCNGG	3 cut(s)	184, 221, 313
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	334
BpuEI	CTTGAG	3 cut(s)	18, 325, 628
BsaI	GGTCTC	2 cut(s)	310, 500
BsaJI	CCNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	3 cut(s)	184, 221, 313
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	448, 451, 508
BsgI	GTGCAG	2 cut(s)	389, 567
BshFI	GGCC	3 cut(s)	147, 239, 402
BshNI	GGYRCC	3 cut(s)	165, 274, 631
BsiHKCI	CYCGRG	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	310, 500
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	3 cut(s)	147, 239, 402
Bso31I	GGTCTC	2 cut(s)	310, 500
BsoBI	CYCGRG	1 cut(s)	355
BspANI	GGCC	3 cut(s)	147, 239, 402
BspCNI	CTCAG	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	6 cut(s)	99, 167, 276, 401, 417, 633
BspT107I	GGYRCC	3 cut(s)	165, 274, 631
BspTNI	GGTCTC	2 cut(s)	310, 500
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	3 cut(s)	184, 221, 313
Bst4CI	ACNGT	2 cut(s)	160, 593
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	342, 404
BstDEI	CTNAG	2 cut(s)	178, 289
BstF5I	GGATG	1 cut(s)	371
BstMAI	GTCTC	2 cut(s)	310, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 603, 612
BstNI	CCWGG	3 cut(s)	184, 221, 313
BstSCI	CCNGG	3 cut(s)	182, 219, 311
BstV1I	GCAGC	3 cut(s)	448, 451, 508
BstV2I	GAAGAC	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	147, 239, 402
BtsCI	GGATG	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	342, 404
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	98, 400, 416
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	51, 86, 166
CspCI	CAANNNNNGTGG	4 cut(s)	63, 98, 238, 273
CviAII	CATG	2 cut(s)	46, 208
CviQI	GTAC	3 cut(s)	51, 86, 166
DdeI	CTNAG	2 cut(s)	178, 289
Eco130I	CCWWGG	1 cut(s)	484
Eco31I	GGTCTC	2 cut(s)	310, 500
Eco47I	GGWCC	2 cut(s)	98, 416
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	355
EcoO109I	RGGNCCY	2 cut(s)	400, 416
EcoRII	CCWGG	3 cut(s)	182, 219, 311
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	49, 211
FatI	CATG	2 cut(s)	45, 207
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	3 cut(s)	462, 465, 522
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	3 cut(s)	462, 465, 522
FspBI	CTAG	2 cut(s)	230, 386
GluI	GCNGC	3 cut(s)	462, 465, 522
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	147, 239, 402
Hin1II	CATG	2 cut(s)	49, 211
HphI	GGTGA	2 cut(s)	22, 500
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	208, 357
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	5 cut(s)	134, 179, 203, 250, 406
HpyCH4III	ACNGT	2 cut(s)	160, 593
HpyCH4V	TGCA	5 cut(s)	74, 406, 455, 524, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 603, 612
HpyF3I	CTNAG	2 cut(s)	178, 289
Hsp92II	CATG	2 cut(s)	49, 211
KpnI	GGTACC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	3 cut(s)	448, 451, 508
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	2 cut(s)	230, 386
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	4 cut(s)	223, 584, 587, 599
MfeI	CAATTG	2 cut(s)	450, 456
MluCI	AATT	7 cut(s)	41, 105, 264, 450, 456, 552, 579
MmeI	TCCRAC	2 cut(s)	125, 496
MnlI	CCTC	2 cut(s)	70, 605
MslI	CAYNNNNRTG	1 cut(s)	280
MspR9I	CCNGG	3 cut(s)	184, 221, 313
MunI	CAATTG	2 cut(s)	450, 456
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	3 cut(s)	184, 221, 313
MwoI	GCNNNNNNNGC	3 cut(s)	461, 603, 612
NdeI	CATATG	1 cut(s)	395
NlaIII	CATG	2 cut(s)	49, 211
NlaIV	GGNNCC	6 cut(s)	99, 167, 276, 401, 417, 633
NmuCI	GTSAC	1 cut(s)	10
PagI	TCATGA	1 cut(s)	207
PctI	GAATGC	1 cut(s)	381
PkrI	GCNGC	3 cut(s)	463, 466, 523
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	3 cut(s)	182, 219, 311
PspGI	CCWGG	3 cut(s)	182, 219, 311
PspN4I	GGNNCC	6 cut(s)	99, 167, 276, 401, 417, 633
PspPI	GGNCC	3 cut(s)	98, 400, 416
PspPPI	RGGWCCY	1 cut(s)	416
RsaI	GTAC	3 cut(s)	52, 87, 167
RsaNI	GTAC	3 cut(s)	51, 86, 166
RseI	CAYNNNNRTG	1 cut(s)	280
SatI	GCNGC	3 cut(s)	462, 465, 522
Sau96I	GGNCC	3 cut(s)	98, 400, 416
ScrFI	CCNGG	3 cut(s)	184, 221, 313
SexAI	ACCWGGT	1 cut(s)	219
SinI	GGWCC	2 cut(s)	98, 416
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	3 cut(s)	33, 304, 607
SmoI	CTYRAG	3 cut(s)	33, 304, 607
Sse9I	AATT	7 cut(s)	41, 105, 264, 450, 456, 552, 579
SspMI	CTAG	2 cut(s)	230, 386
StyD4I	CCNGG	3 cut(s)	182, 219, 311
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	160, 593
TaqI	TCGA	1 cut(s)	431
TasI	AATT	7 cut(s)	41, 105, 264, 450, 456, 552, 579
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	461, 464, 521
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	34, 224, 360
TspGWI	ACGGA	2 cut(s)	324, 364
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	98, 416
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	2 cut(s)	230, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.