Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

84587515 .. 84589303

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCAACCTCTCTCCTGCATTTATCTTCATACTTGCTGTAGTCTTCAGGTGGCCATTTACTTACTGTTGGGTACCTTCTATTCTCAGCCTGGTGTATCCTTCAGCTAGTTCTGGCTTCTTATACAACTTGTGTGGCACAATTATATTGGCACCAGTATGTTTCTTAGCTGAAAGAAACTTGAGTGCCTGGAGACCACAACCTGTTATTCCGTTGCCTGCCATTATCTACTCGGGAGTATTTGGTTCATCCGTCAGCATTCTAGTTCACATATGGGGCCTGCACTTGAAGGGTCCTGTTTATATTTCGAGCTTCAAGCCATTGTCAATTGCAATTGCTGCTGCTTTCGGTGTCATATTCCTTGGTGATGGTCTCTCTCTTGGCAGTGTTGTTGGAGCTGCAACGCTATCAATAGGTTTTTATGCAGTAATTTGGGGAAAAGGGAAAAGAAGAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

153

Amino Acids

16.48

Weight (kDa)

9.88

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 144	5.4e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	2 cut(s)	73, 151
AcoI	YGGCCR	1 cut(s)	53
AcuI	CTGAAG	2 cut(s)	31, 87
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	289, 316
AjnI	CCWGG	2 cut(s)	90, 188
AluBI	AGCT	4 cut(s)	107, 170, 312, 398
AluI	AGCT	4 cut(s)	107, 170, 312, 398
Alw26I	GTCTC	2 cut(s)	187, 377
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	2 cut(s)	53, 277
ApeKI	GCWGC	3 cut(s)	338, 341, 398
Asp718I	GGTACC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	277, 293
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	73, 151
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	325, 328, 385
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	92, 190
BciVI	GTATCC	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	187, 377
BfaI	CTAG	2 cut(s)	108, 263
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	3 cut(s)	339, 342, 399
BlsI	GCNGC	3 cut(s)	340, 343, 400
Bme1390I	CCNGG	2 cut(s)	92, 190
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	277, 293
BmiI	GGNNCC	4 cut(s)	75, 153, 278, 294
BmrFI	CCNGG	2 cut(s)	92, 190
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	202
BsaI	GGTCTC	2 cut(s)	187, 377
BsaJI	CCNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	92, 190
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	3 cut(s)	325, 328, 385
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	55, 279
BshNI	GGYRCC	2 cut(s)	73, 151
BsiHKCI	CYCGRG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	187, 377
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	55, 279
Bso31I	GGTCTC	2 cut(s)	187, 377
BsoBI	CYCGRG	1 cut(s)	232
BspANI	GGCC	2 cut(s)	55, 279
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	4 cut(s)	75, 153, 278, 294
BspT107I	GGYRCC	2 cut(s)	73, 151
BspTNI	GGTCTC	2 cut(s)	187, 377
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	92, 190
Bst4CI	ACNGT	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	219, 281
BstDEI	CTNAG	2 cut(s)	86, 166
BstF5I	GGATG	1 cut(s)	248
BstMAI	GTCTC	2 cut(s)	187, 377
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	2 cut(s)	92, 190
BstSCI	CCNGG	2 cut(s)	90, 188
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	325, 328, 385
BstV2I	GAAGAC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	55, 279
BtsCI	GGATG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	219, 281
Cfr13I	GGNCC	2 cut(s)	277, 293
Csp6I	GTAC	1 cut(s)	74
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviJI	RGCY	9 cut(s)	55, 90, 107, 117, 170, 279, 312, 319, 398
CviKI_1	RGCY	9 cut(s)	55, 90, 107, 117, 170, 279, 312, 319, 398
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	86, 166
EaeI	YGGCCR	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	361
Eco31I	GGTCTC	2 cut(s)	187, 377
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	31, 87
Eco88I	CYCGRG	1 cut(s)	232
EcoO109I	RGGNCCY	2 cut(s)	277, 293
EcoRII	CCWGG	2 cut(s)	90, 188
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaiI	YATR	9 cut(s)	32, 124, 146, 160, 272, 274, 303, 356, 423
FauNDI	CATATG	1 cut(s)	272
Fnu4HI	GCNGC	3 cut(s)	339, 342, 399
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	3 cut(s)	339, 342, 399
FspBI	CTAG	2 cut(s)	108, 263
GluI	GCNGC	3 cut(s)	339, 342, 399
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	55, 279
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	87, 111, 283
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	20, 283, 332, 401, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	86, 166
KpnI	GGTACC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	3 cut(s)	325, 328, 385
MaeI	CTAG	2 cut(s)	108, 263
MboII	GAAGA	3 cut(s)	19, 37, 462
MfeI	CAATTG	2 cut(s)	327, 333
MlsI	TGGCCA	1 cut(s)	55
MluCI	AATT	5 cut(s)	141, 327, 333, 429, 457
MluNI	TGGCCA	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	1 cut(s)	20
Mox20I	TGGCCA	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	55
MslI	CAYNNNNRTG	1 cut(s)	157
Msp20I	TGGCCA	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	92, 190
MunI	CAATTG	2 cut(s)	327, 333
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	92, 190
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeI	CATATG	1 cut(s)	272
NlaIV	GGNNCC	4 cut(s)	75, 153, 278, 294
PctI	GAATGC	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	340, 343, 400
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	90, 188
PspGI	CCWGG	2 cut(s)	90, 188
PspN4I	GGNNCC	4 cut(s)	75, 153, 278, 294
PspPI	GGNCC	2 cut(s)	277, 293
PspPPI	RGGWCCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	157
SatI	GCNGC	3 cut(s)	339, 342, 399
Sau96I	GGNCC	2 cut(s)	277, 293
ScrFI	CCNGG	2 cut(s)	92, 190
SetI	ASST	9 cut(s)	12, 53, 79, 109, 172, 205, 314, 400, 418
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	5 cut(s)	141, 327, 333, 429, 457
SspMI	CTAG	2 cut(s)	108, 263
StyD4I	CCNGG	2 cut(s)	90, 188
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	308
TasI	AATT	5 cut(s)	141, 327, 333, 429, 457
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	3 cut(s)	338, 341, 398
TspDTI	ATGAA	2 cut(s)	19, 237
TspGWI	ACGGA	2 cut(s)	201, 241
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	293
XspI	CTAG	2 cut(s)	108, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.