Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

4097067 .. 4099300

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCAGGGAGGTCCTGTTACAGAGATGTGTTGCCCTTTACAGCCATGGTTACAGTAGAGAGCATCAATGTTGGCTTAAACATCTTATTCAAGTCAGCAACCTCAAAGGGGTTGAGTAACTATGTCTTCATTGTCTACTCTTATGCATTTGCCACTGTTCTTCTTCTCCCTCTTCCCTTCATTTTTCCCAGCAGAACAAGGCTTCCTCCATTCAAGTTTTCTCTTCTCGTTAAAGCTTTCCTACTTGGATTGATCGGGTTTGTGGCAAATTTATGTGCATATAAAGGTATAGATTACGGTTCACCAACTCTTGCTTCAGCAATGAGCAACCTCACTCCGGCTTTTACATTCATACTTGCCGTCATCTTCAGAATGGAAAGGCTGAGTGTGAAAAGCATCAGCACCCAAGCCAAAGTCATGGGTACTTTAGTGTCAATATCAGGTGCTCTAGTGGTGGTTCTCTATAGAGGCCCAACAGTTCTATCCAATACATCAGAAAAGGATTGGGTAAAAGGTGGCATATTACTTACTGTTGGGTACCTTCTGTTCTCTACCTGGTCAATCCTTCAGACACATATCATGAAGACATACCCGGCTGAGCTAGTTTTGGCACTGTTATACAACTTGTTTGGAACAATTGTATCAGCGCCAGTGTGTGTACTAATAGCTGAAACAAAGTTAAGTGCCTGGAGACTAAGGCCTGGGGTAGCATTGGCTGCCATTATGTACTCGGGGCTCTTTAGTTCAGCCTTGAGCACCCTTGTTAAGACATGGAGCCTAAACTTGAAAGGTCCTGTGTATGTATCAATCTTCAGCCCATTGTCAATTGTCATTGCTGCTGCATCCAGTGTCATATTCCTCGGTGATAATCTCTTTCTCGGCAGTGTTGTTGGAGCTGTAATGATATGCATAGGTTTTTATGGGGTAATATGGGGACAGGCAAAGGAAGAAGAAATGAAAGATCAAGACTATGGCTTTGATAGCTTGAGAGGGTTACATTGTGGTAAGGCACCATTATTGGAAACCTACAAAGTTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

347

Amino Acids

37.65

Weight (kDa)

9.33

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	24 - 153	1.3e-11	EamA-like transporter family
EamA	PF00892	172 - 310	3.2e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	2 cut(s)	537, 1009
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	4 cut(s)	300, 352, 551, 796
AfaI	GTAC	4 cut(s)	424, 539, 660, 728
AfiI	CCNNNNNNNGG	2 cut(s)	108, 337
AgsI	TTSAA	4 cut(s)	91, 214, 787, 1037
AjnI	CCWGG	3 cut(s)	554, 686, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	5 cut(s)	236, 601, 668, 896, 984
AluI	AGCT	5 cut(s)	236, 601, 668, 896, 984
Alw21I	GWGCWC	2 cut(s)	448, 758
Alw26I	GTCTC	1 cut(s)	685
Ama87I	CYCGRG	1 cut(s)	730
AoxI	GGCC	2 cut(s)	469, 698
ApeKI	GCWGC	3 cut(s)	716, 836, 839
ApoI	RAATTY	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	959, 991
Asp718I	GGTACC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	3 cut(s)	12, 470, 791
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	294, 875
AvaI	CYCGRG	1 cut(s)	730
AvaII	GGWCC	2 cut(s)	12, 791
BaeI	ACNNNNGTAYC	4 cut(s)	414, 447, 624, 657
BanI	GGYRCC	2 cut(s)	537, 1009
BanII	GRGCYC	1 cut(s)	738
BbsI	GAAGAC	2 cut(s)	118, 590
Bbv12I	GWGCWC	2 cut(s)	448, 758
BbvI	GCAGC	3 cut(s)	703, 823, 826
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	3 cut(s)	556, 688, 702
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	2 cut(s)	449, 602
BfmI	CTRYAG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	650
BisI	GCNGC	3 cut(s)	717, 837, 840
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	3 cut(s)	718, 838, 841
Bme1390I	CCNGG	4 cut(s)	556, 593, 688, 702
Bme18I	GGWCC	2 cut(s)	12, 791
BmeT110I	CYCGRG	1 cut(s)	730
BmgT120I	GGNCC	3 cut(s)	12, 470, 791
BmiI	GGNNCC	3 cut(s)	539, 776, 1011
BmrFI	CCNGG	4 cut(s)	556, 593, 688, 702
BmsI	GCATC	3 cut(s)	72, 405, 851
BpiI	GAAGAC	2 cut(s)	118, 590
BpmI	CTGGAG	1 cut(s)	709
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	772, 1006
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	45, 701, 859
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 337
Bse1I	ACTGG	2 cut(s)	650, 846
Bse3DI	GCAATG	2 cut(s)	327, 831
BseBI	CCWGG	3 cut(s)	556, 688, 702
BseDI	CCNNGG	3 cut(s)	45, 701, 859
BseGI	GGATG	1 cut(s)	842
BseLI	CCNNNNNNNGG	2 cut(s)	108, 337
BseMI	GCAATG	2 cut(s)	327, 831
BseMII	CTCAG	2 cut(s)	374, 588
BseNI	ACTGG	2 cut(s)	650, 846
BseXI	GCAGC	3 cut(s)	703, 823, 826
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	2 cut(s)	471, 700
BshNI	GGYRCC	2 cut(s)	537, 1009
BsiHKAI	GWGCWC	2 cut(s)	448, 758
BsiHKCI	CYCGRG	1 cut(s)	730
BsiSI	CCGG	2 cut(s)	338, 593
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	2 cut(s)	108, 337
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	948
BsnI	GGCC	2 cut(s)	471, 700
BsoBI	CYCGRG	1 cut(s)	730
Bsp1286I	GDGCHC	3 cut(s)	448, 738, 758
Bsp143I	GATC	2 cut(s)	252, 961
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	471, 700
BspCNI	CTCAG	2 cut(s)	375, 589
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	3 cut(s)	539, 776, 1011
BspT107I	GGYRCC	2 cut(s)	537, 1009
BsrDI	GCAATG	2 cut(s)	327, 831
BsrI	ACTGG	2 cut(s)	650, 846
BssECI	CCNNGG	3 cut(s)	45, 701, 859
BssMI	GATC	2 cut(s)	252, 961
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	556, 688, 702
Bst4CI	ACNGT	6 cut(s)	55, 157, 299, 478, 532, 615
Bst6I	CTCTTC	2 cut(s)	177, 228
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstDEI	CTNAG	3 cut(s)	383, 597, 695
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	842
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	2 cut(s)	255, 964
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	2 cut(s)	252, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 981
BstNI	CCWGG	3 cut(s)	556, 688, 702
BstSCI	CCNGG	4 cut(s)	554, 591, 686, 700
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	703, 823, 826
BstV2I	GAAGAC	2 cut(s)	118, 590
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	471, 700
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	842
BtsI	GCAGTG	1 cut(s)	889
BtsIMutI	CAGTG	5 cut(s)	153, 611, 657, 853, 889
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	12, 470, 791
CsiI	ACCWGGT	1 cut(s)	554
Csp6I	GTAC	4 cut(s)	423, 538, 659, 727
CviAII	CATG	4 cut(s)	46, 418, 580, 771
CviQI	GTAC	4 cut(s)	423, 538, 659, 727
DdeI	CTNAG	3 cut(s)	383, 597, 695
DpnI	GATC	2 cut(s)	254, 963
DpnII	GATC	2 cut(s)	252, 961
Eam1104I	CTCTTC	2 cut(s)	177, 228
EarI	CTCTTC	2 cut(s)	177, 228
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	700
Eco24I	GRGCYC	1 cut(s)	738
Eco47I	GGWCC	2 cut(s)	12, 791
Eco57I	CTGAAG	4 cut(s)	300, 352, 551, 796
Eco88I	CYCGRG	1 cut(s)	730
EcoO109I	RGGNCCY	2 cut(s)	12, 791
EcoRII	CCWGG	3 cut(s)	554, 686, 700
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	2 cut(s)	148, 911
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	4 cut(s)	49, 421, 583, 774
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	4 cut(s)	45, 417, 579, 770
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	717, 837, 840
FokI	GGATG	1 cut(s)	829
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	3 cut(s)	717, 837, 840
FspBI	CTAG	2 cut(s)	449, 602
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	3 cut(s)	717, 837, 840
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	709
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	471, 700
HapII	CCGG	2 cut(s)	338, 593
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	4 cut(s)	49, 421, 583, 774
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HindIII	AAGCTT	1 cut(s)	234
HpaII	CCGG	2 cut(s)	338, 593
HphI	GGTGA	2 cut(s)	294, 875
Hpy166II	GTNNAC	3 cut(s)	136, 302, 659
Hpy188I	TCNGA	3 cut(s)	371, 496, 570
Hpy188III	TCNNGA	2 cut(s)	580, 965
Hpy8I	GTNNAC	3 cut(s)	136, 302, 659
HpyAV	CCTTC	3 cut(s)	187, 551, 575
HpyCH4III	ACNGT	6 cut(s)	55, 157, 299, 478, 532, 615
HpyCH4V	TGCA	4 cut(s)	146, 278, 842, 909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 981
HpyF3I	CTNAG	3 cut(s)	383, 597, 695
Hsp92II	CATG	4 cut(s)	49, 421, 583, 774
HspAI	GCGC	1 cut(s)	647
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	252, 961
LmnI	GCTCC	2 cut(s)	774, 893
Lsp1109I	GCAGC	3 cut(s)	703, 823, 826
LweI	GCATC	3 cut(s)	72, 405, 851
MabI	ACCWGGT	1 cut(s)	554
MaeI	CTAG	2 cut(s)	449, 602
MaeIII	GTNAC	4 cut(s)	17, 49, 116, 993
MalI	GATC	2 cut(s)	254, 963
MboI	GATC	2 cut(s)	252, 961
MfeI	CAATTG	2 cut(s)	636, 825
MhlI	GDGCHC	3 cut(s)	448, 738, 758
MluCI	AATT	3 cut(s)	268, 636, 825
MmeI	TCCRAC	1 cut(s)	871
MnlI	CCTC	8 cut(s)	3, 112, 180, 216, 341, 461, 869, 983
Mph1103I	ATGCAT	2 cut(s)	148, 911
MseI	TTAA	4 cut(s)	77, 231, 680, 765
MspI	CCGG	2 cut(s)	338, 593
MspR9I	CCNGG	4 cut(s)	556, 593, 688, 702
MunI	CAATTG	2 cut(s)	636, 825
MvaI	CCWGG	3 cut(s)	556, 688, 702
MwoI	GCNNNNNNNGC	2 cut(s)	716, 981
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	252, 961
NlaIII	CATG	4 cut(s)	49, 421, 583, 774
NlaIV	GGNNCC	3 cut(s)	539, 776, 1011
NmeAIII	GCCGAG	1 cut(s)	858
NsiI	ATGCAT	2 cut(s)	148, 911
PagI	TCATGA	1 cut(s)	579
PceI	AGGCCT	1 cut(s)	700
PkrI	GCNGC	3 cut(s)	718, 838, 841
PpuMI	RGGWCCY	2 cut(s)	12, 791
Psp5II	RGGWCCY	2 cut(s)	12, 791
Psp6I	CCWGG	3 cut(s)	554, 686, 700
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	3 cut(s)	554, 686, 700
PspN4I	GGNNCC	3 cut(s)	539, 776, 1011
PspPI	GGNCC	3 cut(s)	12, 470, 791
PspPPI	RGGWCCY	2 cut(s)	12, 791
PsrI	GAACNNNNNNTAC	2 cut(s)	530, 562
RsaI	GTAC	4 cut(s)	424, 539, 660, 728
RsaNI	GTAC	4 cut(s)	423, 538, 659, 727
SaqAI	TTAA	4 cut(s)	77, 231, 680, 765
SatI	GCNGC	3 cut(s)	717, 837, 840
Sau3AI	GATC	2 cut(s)	252, 961
Sau96I	GGNCC	3 cut(s)	12, 470, 791
ScrFI	CCNGG	4 cut(s)	556, 593, 688, 702
SduI	GDGCHC	3 cut(s)	448, 738, 758
SexAI	ACCWGGT	1 cut(s)	554
SfaNI	GCATC	3 cut(s)	72, 405, 851
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	2 cut(s)	12, 791
SmlI	CTYRAG	2 cut(s)	751, 985
SmoI	CTYRAG	2 cut(s)	751, 985
Sse9I	AATT	3 cut(s)	268, 636, 825
SseBI	AGGCCT	1 cut(s)	700
SspMI	CTAG	2 cut(s)	449, 602
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	4 cut(s)	554, 591, 686, 700
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	6 cut(s)	55, 157, 299, 478, 532, 615
TasI	AATT	3 cut(s)	268, 636, 825
TatI	WGTACW	2 cut(s)	658, 726
Tru1I	TTAA	4 cut(s)	77, 231, 680, 765
Tru9I	TTAA	4 cut(s)	77, 231, 680, 765
TscAI	CASTG	5 cut(s)	160, 618, 657, 853, 889
TseI	GCWGC	3 cut(s)	716, 836, 839
TspDTI	ATGAA	5 cut(s)	118, 169, 340, 596, 971
TspRI	CASTG	5 cut(s)	160, 618, 657, 853, 889
VpaK11BI	GGWCC	2 cut(s)	12, 791
XapI	RAATTY	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	449, 602
Zsp2I	ATGCAT	2 cut(s)	148, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.