Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

79712378 .. 79714250

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021980

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAATGGATGTCTGGTCACAAGGATGTTCTGCCGTTCACCGCCATGATTATCGTGGAGTGCATCAATGTGGGGTCAGGCGTCTTCTTCAAGGCAGCTGCCTCAAGAGGGTTGAGCTACTATGTTCTCATTGTCTACTCTTATGCAATTGCCACCATTCTCCTCCTCCCTCTGCCTTTCATCTTTCGCAGAACAGGGCTTCCACCATTCAAGCTCTCTCTCATATTTAAACTCTTCCTCCTTGGGATAATCGGGTTTTCGGGTAGTTTATGTGTATATAAAGGTATAGAATACAGTTCACCAACTCTTGCTTCAGCTATTGGTAACCTTTCCCCAGCTTTTATCTTCATACTTGCTGTAACCTTCAGTATGGAAAGACTAAATTGGAGAAGCAGAAGCACACGAGCCAAAGTGATGGGTACTCTAGTATCAATATCAGGCGCACTAGTAGAAGTGCTCTATAAGGGCCCAACAATTCTATCACCTACGACTCCATCCATTCTCGGAATGTCAGAAAAGGAGTGGGTAAAAGGTGGCCTATTACTTACTCTTGGATACCTTCTCTTCTCTATGTGGGCTATCCTTCAGACCCATATCATGAAGACATACCCAGATGAGCTAGTTCTGGCCTTCTTATACAACTTGTGTGGGACAATTGTATCAGCACCAACATATTTTGGCTTTAGGGGTCTGGTGGTTGTCTTTTGCTTTTGTTTCTATTACGGGTCCTTTGTTTTATCCTTTGGCATCCTTGTTCACATATGGGGCATGCACATGAAGGGTCCTGTGTATGTAGCAAGCTTCAAGCCATTATCAATTGTTATTGCTGCTGCTTCGAGTTTCATATTCCTTGGTGATGCTCTCTATCTCGGCAGTGTTGTTGGAGCTATAGTACTCGCCATAGGATTTTATGCTGTTATATGGGGAAAGGCAGAAGAAGAAAAAAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

318

Amino Acids

34.8

Weight (kDa)

9.09

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	22 - 149	6e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	42
AcuI	CTGAAG	3 cut(s)	297, 349, 569
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	421, 894
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	91, 211, 805
AhlI	ACTAGT	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	8 cut(s)	98, 117, 214, 317, 338, 619, 801, 887
AluI	AGCT	8 cut(s)	98, 117, 214, 317, 338, 619, 801, 887
Alw21I	GWGCWC	1 cut(s)	459
AoxI	GGCC	3 cut(s)	466, 535, 627
ApaI	GGGCCC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	95, 98, 827, 830
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	4 cut(s)	466, 467, 726, 782
AsuHPI	GGTGA	4 cut(s)	31, 291, 474, 866
AvaII	GGWCC	2 cut(s)	726, 782
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	6 cut(s)	411, 411, 444, 444, 642, 675
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	76, 608
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	85, 107, 814, 817
BccI	CCATC	2 cut(s)	409, 502
BceAI	ACGGC	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	548
BcuI	ACTAGT	1 cut(s)	445
BfaI	CTAG	3 cut(s)	425, 446, 620
BfmI	CTRYAG	1 cut(s)	888
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	4 cut(s)	96, 99, 828, 831
BlsI	GCNGC	4 cut(s)	97, 100, 829, 832
BmcAI	AGTACT	1 cut(s)	894
Bme18I	GGWCC	2 cut(s)	726, 782
BmgT120I	GGNCC	4 cut(s)	466, 467, 726, 782
BmiI	GGNNCC	3 cut(s)	468, 727, 783
BmsI	GCATC	3 cut(s)	72, 756, 847
BpiI	GAAGAC	2 cut(s)	76, 608
BpuEI	CTTGAG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	241, 850
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 876, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	241, 850
BseGI	GGATG	4 cut(s)	15, 31, 494, 747
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseRI	GAGGAG	2 cut(s)	152, 155
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	4 cut(s)	85, 107, 814, 817
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	3 cut(s)	468, 537, 629
BsiHKAI	GWGCWC	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	468, 537, 629
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	459, 470
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	3 cut(s)	468, 537, 629
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	468, 727, 783
BssECI	CCNNGG	2 cut(s)	241, 850
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	241, 850
Bst2BI	CACGAG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	239, 569
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	770, 799
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	15, 31, 494, 747
BstHHI	GCGC	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	772
BstPI	GGTNACC	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	4 cut(s)	85, 107, 814, 817
BstV2I	GAAGAC	2 cut(s)	76, 608
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	468, 537, 629
BtsCI	GGATG	4 cut(s)	15, 31, 494, 747
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	1 cut(s)	880
Cac8I	GCNNGC	2 cut(s)	770, 799
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	466, 467, 726, 782
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	420, 893
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	4 cut(s)	46, 598, 769, 775
CviQI	GTAC	2 cut(s)	420, 893
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	239, 569
EarI	CTCTTC	2 cut(s)	239, 569
Eco130I	CCWWGG	2 cut(s)	241, 850
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	726, 782
Eco57I	CTGAAG	3 cut(s)	297, 349, 569
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	466, 726, 782
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	241, 850
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	2 cut(s)	241, 850
FaeI	CATG	4 cut(s)	49, 601, 772, 778
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	4 cut(s)	45, 597, 768, 774
FauNDI	CATATG	1 cut(s)	761
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	96, 99, 828, 831
FokI	GGATG	4 cut(s)	22, 38, 481, 734
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	4 cut(s)	96, 99, 828, 831
FspBI	CTAG	3 cut(s)	425, 446, 620
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	4 cut(s)	96, 99, 828, 831
GsaI	CCCAGC	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	468, 537, 629
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	443
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	49, 601, 772, 778
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	799
HinfI	GANTC	1 cut(s)	490
HphI	GGTGA	4 cut(s)	31, 291, 474, 866
Hpy166II	GTNNAC	4 cut(s)	39, 136, 299, 757
Hpy188I	TCNGA	3 cut(s)	506, 514, 588
Hpy188III	TCNNGA	2 cut(s)	105, 598
Hpy8I	GTNNAC	4 cut(s)	39, 136, 299, 757
HpyAV	CCTTC	5 cut(s)	373, 569, 593, 640, 772
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	63, 146, 772
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	49, 601, 772, 778
HspAI	GCGC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	884
LpnPI	CCDG	8 cut(s)	63, 180, 348, 423, 611, 624, 677, 798
Lsp1109I	GCAGC	4 cut(s)	85, 107, 814, 817
LweI	GCATC	3 cut(s)	72, 756, 847
MaeI	CTAG	3 cut(s)	425, 446, 620
MaeIII	GTNAC	3 cut(s)	17, 323, 358
MboII	GAAGA	8 cut(s)	76, 79, 226, 337, 556, 613, 947, 950
MfeI	CAATTG	3 cut(s)	147, 654, 816
MhlI	GDGCHC	2 cut(s)	459, 470
MluCI	AATT	5 cut(s)	147, 382, 474, 654, 816
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	862
MnlI	CCTC	6 cut(s)	101, 112, 173, 176, 180, 248
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	4 cut(s)	24, 44, 68, 773
MspA1I	CMGCKG	1 cut(s)	98
MunI	CAATTG	3 cut(s)	147, 654, 816
NdeI	CATATG	1 cut(s)	761
NlaIII	CATG	4 cut(s)	49, 601, 772, 778
NlaIV	GGNNCC	3 cut(s)	468, 727, 783
NmeAIII	GCCGAG	1 cut(s)	849
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	772
PagI	TCATGA	1 cut(s)	597
PkrI	GCNGC	4 cut(s)	97, 100, 829, 832
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PpuMI	RGGWCCY	2 cut(s)	726, 782
Psp5II	RGGWCCY	2 cut(s)	726, 782
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	468, 727, 783
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	4 cut(s)	466, 467, 726, 782
PspPPI	RGGWCCY	2 cut(s)	726, 782
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	421, 894
RsaNI	GTAC	2 cut(s)	420, 893
RseI	CAYNNNNRTG	4 cut(s)	24, 44, 68, 773
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	96, 99, 828, 831
Sau96I	GGNCC	4 cut(s)	466, 467, 726, 782
ScaI	AGTACT	1 cut(s)	894
SchI	GAGTC	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	459, 470
SfaNI	GCATC	3 cut(s)	72, 756, 847
SfcI	CTRYAG	1 cut(s)	888
SinI	GGWCC	2 cut(s)	726, 782
SmiMI	CAYNNNNRTG	4 cut(s)	24, 44, 68, 773
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	445
SphI	GCATGC	1 cut(s)	772
Sse9I	AATT	5 cut(s)	147, 382, 474, 654, 816
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	3 cut(s)	425, 446, 620
StyI	CCWWGG	2 cut(s)	241, 850
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	836
TasI	AATT	5 cut(s)	147, 382, 474, 654, 816
TatI	WGTACW	1 cut(s)	892
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	880
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	95, 98, 827, 830
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	5 cut(s)	169, 337, 614, 791, 832
TspRI	CASTG	1 cut(s)	880
VpaK11BI	GGWCC	2 cut(s)	726, 782
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	3 cut(s)	425, 446, 620
ZrmI	AGTACT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.