Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

79709659 .. 79711636

Gene Structure 1978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAATGGCATGGAGGTACTATCATAAGGATGTTCTACCGTTCATCGCCATGGTTACAATGGGGTGCGCTAATGTTGGGTTAAACGTCTTATTCAAAGCAGCCACCTCAAGAGGGTTGAGCTACTATGTCTTCATTGTCTACTCTTATGCAATTGGCACCATTCTTCTGTTTCCTCTGACTCTCATCTTTCGCAGAACAGAACTTCCTCCCTTCAAGCTCACTCTCCTCTTTAAACTGTTACCTTGGACTGATTGGACACATATCATGAAGATATACCCAGTTGAGCTAGTTATGGCCTTCTTATACAACTTGTGTGGCACAATTATATTGGCACCACCGCACCAGTATGTTTCTTACTGTTGGGTACCTTCTATTCTCAGCTTGGTGTATCCTTCAGGGAGTATTGGTTCATCCGTCAGCATTCTAGTTCACATACGGGGCCTGCACCTGAAGGGTCCTGTTCACATTTCGAGCTTCAAGCCATTGTCAATTGCAATTGCTGCTGCTTTTGGTGTCAGATTCCTTGGTGATGGTCTCTCTCTTGGCAGTGTTGTTGGAGCTGCAACGCTATCAATAGGTTTTTATGCAGTAATTTGGGGAAAGGGAAAAGAAGAAGAAATTAGTGAAGACTGTGACTTTGATAGCTTGAGAGGCTTACCTACTGGTAAGGCACCTTTGTTAGAAAGCTACAAAGTTGAAGCGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

237

Amino Acids

26.07

Weight (kDa)

8.81

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	4 cut(s)	158, 334, 367, 673
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	381, 473
AfaI	GTAC	2 cut(s)	20, 369
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	4 cut(s)	97, 217, 481, 701
AloI	GAACNNNNNNTCC	4 cut(s)	190, 222, 394, 426
AluBI	AGCT	8 cut(s)	123, 220, 289, 384, 477, 563, 648, 690
AluI	AGCT	8 cut(s)	123, 220, 289, 384, 477, 563, 648, 690
Alw26I	GTCTC	1 cut(s)	542
AoxI	GGCC	2 cut(s)	297, 442
ApeKI	GCWGC	4 cut(s)	101, 503, 506, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
Asp718I	GGTACC	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	442, 458
AsuHPI	GGTGA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	458
BanI	GGYRCC	4 cut(s)	158, 334, 367, 673
BbsI	GAAGAC	2 cut(s)	124, 636
BbvI	GCAGC	4 cut(s)	113, 490, 493, 550
BccI	CCATC	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	290, 428
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	4 cut(s)	102, 504, 507, 564
BlsI	GCNGC	4 cut(s)	103, 505, 508, 565
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	442, 458
BmiI	GGNNCC	6 cut(s)	160, 336, 369, 443, 459, 675
BmrI	ACTGGG	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	2 cut(s)	124, 636
BpuEI	CTTGAG	2 cut(s)	94, 670
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	3 cut(s)	51, 245, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	3 cut(s)	281, 346, 670
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	51, 245, 526
BseGI	GGATG	2 cut(s)	37, 413
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	3 cut(s)	281, 346, 670
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	113, 490, 493, 550
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	299, 444
BshNI	GGYRCC	4 cut(s)	158, 334, 367, 673
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	299, 444
Bso31I	GGTCTC	1 cut(s)	542
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	2 cut(s)	299, 444
BspCNI	CTCAG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	6 cut(s)	160, 336, 369, 443, 459, 675
BspT107I	GGYRCC	4 cut(s)	158, 334, 367, 673
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	281, 346, 670
BssECI	CCNNGG	3 cut(s)	51, 245, 526
BssT1I	CCWWGG	3 cut(s)	51, 245, 526
Bst4CI	ACNGT	4 cut(s)	42, 240, 362, 635
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	37, 413
BstHHI	GCGC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	542
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 654
BstV1I	GCAGC	4 cut(s)	113, 490, 493, 550
BstV2I	GAAGAC	2 cut(s)	124, 636
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	299, 444
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	37, 413
BtsI	GCAGTG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	446
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	442, 458
Csp6I	GTAC	2 cut(s)	19, 368
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	3 cut(s)	12, 52, 268
CviQI	GTAC	2 cut(s)	19, 368
DdeI	CTNAG	1 cut(s)	380
DraI	TTTAAA	1 cut(s)	235
Eco130I	CCWWGG	3 cut(s)	51, 245, 526
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	381, 473
EcoO109I	RGGNCCY	2 cut(s)	442, 458
EcoT14I	CCWWGG	3 cut(s)	51, 245, 526
ErhI	CCWWGG	3 cut(s)	51, 245, 526
FaeI	CATG	3 cut(s)	15, 55, 271
FatI	CATG	3 cut(s)	11, 51, 267
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	102, 504, 507, 564
FokI	GGATG	2 cut(s)	44, 400
Fsp4HI	GCNGC	4 cut(s)	102, 504, 507, 564
FspBI	CTAG	2 cut(s)	290, 428
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	102, 504, 507, 564
HaeIII	GGCC	2 cut(s)	299, 444
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	15, 55, 271
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	181, 522
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	3 cut(s)	142, 433, 466
Hpy188I	TCNGA	2 cut(s)	180, 521
Hpy188III	TCNNGA	2 cut(s)	111, 268
Hpy8I	GTNNAC	3 cut(s)	142, 433, 466
HpyAV	CCTTC	5 cut(s)	223, 310, 381, 405, 448
HpyCH4III	ACNGT	4 cut(s)	42, 240, 362, 635
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	152, 448, 497, 566, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 654
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	15, 55, 271
HspAI	GCGC	1 cut(s)	69
KpnI	GGTACC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	560
LpnPI	CCDG	7 cut(s)	294, 359, 384, 458, 464, 474, 651
Lsp1109I	GCAGC	4 cut(s)	113, 490, 493, 550
MaeI	CTAG	2 cut(s)	290, 428
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	55, 240, 635
MboII	GAAGA	6 cut(s)	124, 158, 283, 626, 629, 641
MfeI	CAATTG	3 cut(s)	153, 492, 498
MluCI	AATT	6 cut(s)	153, 324, 492, 498, 594, 621
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	7 cut(s)	9, 107, 118, 186, 219, 239, 647
MseI	TTAA	2 cut(s)	83, 234
MslI	CAYNNNNRTG	3 cut(s)	30, 50, 348
MunI	CAATTG	3 cut(s)	153, 492, 498
Mva1269I	GAATGC	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	503, 654
NcoI	CCATGG	1 cut(s)	51
NlaIII	CATG	3 cut(s)	15, 55, 271
NlaIV	GGNNCC	6 cut(s)	160, 336, 369, 443, 459, 675
NmuCI	GTSAC	1 cut(s)	635
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	522
PkrI	GCNGC	4 cut(s)	103, 505, 508, 565
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
PspN4I	GGNNCC	6 cut(s)	160, 336, 369, 443, 459, 675
PspPI	GGNCC	2 cut(s)	442, 458
PspPPI	RGGWCCY	1 cut(s)	458
RsaI	GTAC	2 cut(s)	20, 369
RsaNI	GTAC	2 cut(s)	19, 368
RseI	CAYNNNNRTG	3 cut(s)	30, 50, 348
SaqAI	TTAA	2 cut(s)	83, 234
SatI	GCNGC	4 cut(s)	102, 504, 507, 564
Sau96I	GGNCC	2 cut(s)	442, 458
SchI	GAGTC	1 cut(s)	175
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	3 cut(s)	30, 50, 348
SmlI	CTYRAG	2 cut(s)	109, 649
SmoI	CTYRAG	2 cut(s)	109, 649
Sse9I	AATT	6 cut(s)	153, 324, 492, 498, 594, 621
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	2 cut(s)	290, 428
StyI	CCWWGG	3 cut(s)	51, 245, 526
TaaI	ACNGT	4 cut(s)	42, 240, 362, 635
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	473
TasI	AATT	6 cut(s)	153, 324, 492, 498, 594, 621
TfiI	GAWTC	1 cut(s)	522
Tru1I	TTAA	2 cut(s)	83, 234
Tru9I	TTAA	2 cut(s)	83, 234
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	4 cut(s)	101, 503, 506, 563
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	4 cut(s)	34, 124, 284, 402
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	290, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.