FvH4_6g50361

WAT1-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
37502690 .. 37507653
4964 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50361.t5

Sequence Viewer

Length: 1110 bp
ATGGCAGGAAGGTCTTGTTACAGAGATGTGTTGCCCTTTACAGCCATGGTTACAGTGGAGAGCACCAACGTTGGTTTAAACATCTTATTCAAGTCAGCAACATCAAAAGGGTTGAGTTACTATGTCTTCATAGTCTACTCTTATGCATTTGCCACTCTTCTTCTCCTCCCTCTTCCTTTCATTTTTTCCAGCAGAACAAGGCTTCCTCCATTTGAGCTCTCTCTTATAGTGAAAGCTTTCATCCTTGGATTCATTGGGTTTATGGCAAATATATGTGCATATAAAGGTATAGATTACAGTTCACCAACTCTTGCTTCAGCTATCAGCAACCTCACGCCGGCTTTTACTTTCATACTTGCCATCATCTTCAGAATGGAAATGCTGAGTATGAGAAGCACTAGCACACAAGCCAAAGTCATTGGTACTTTAGTGTCAATATCAGGTGCTCTGGTGGTGGTTCTCTATAGGGGCCCAATAGTTCTATCCACTGCATCAGAAAAGGATTGGGTAAAAGGTGGCCTATTACTTACTGTTGGGTACCTTCTGTTCTCTACCTGGTCTATACTTCAGACACATATTATGAAGACATACCCGGCTGAGCTAGTTTTGGCACTGTTATACAACTTGTTTGGAACAATTGTATCAGCACCATTTTGTGTACTAATAGCTGAAACAAACTTAAGTGCCTGGAGACTAAGGCCTGGGGTAGCGTTGGCTGCCATTATATACTCGGGGATCTTTAGTTCAGCCTTGAGCACCGTTGTTAAGACATGGAGCCTAAACTTGAAAGGTCCTGTGTATGTATCAATCTTCAAGCCCTTGTCAATTGTCATTGCTGCTGCATCCAGTGTAATATTCCTCGGCGATGATCTCTTTCTCGGCAGTATTATTGGAGCTGTAATGATATCCATAGGATTTTATGGGGTGATATGGGGAAAGACAAAGGAAGAAGAAAAGATGGATCAAGAATATGGCTTTGATAGCTTGAGAGAGTCACATAGTTGTGAGGCACCATTATTGGAAACCTACAAAGCTGAAAAAAGCAGCAAGTCCAAACCGATCTACAGATACAACTTGTATATCAACACTTGCAGGCGCAGAGCCAGGTAA

Protein Analysis

370

Amino Acids

40.63

Weight (kDa)

9.4

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 84 - 223 3e-08 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 537
AccB1I GGYRCC 2 cut(s) 537, 1009
AccI GTMKAC 1 cut(s) 135
AclI AACGTT 1 cut(s) 69
AclWI GGATC 2 cut(s) 743, 969
AcuI CTGAAG 3 cut(s) 300, 352, 551
AfaI GTAC 3 cut(s) 424, 539, 660
AfiI CCNNNNNNNGG 1 cut(s) 337
AflII CTTAAG 1 cut(s) 679
AgsI TTSAA 3 cut(s) 91, 787, 814
AjnI CCWGG 4 cut(s) 554, 686, 700, 1103
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AloI GAACNNNNNNTCC 4 cut(s) 187, 219, 727, 759
AluBI AGCT 8 cut(s) 217, 236, 320, 601, 668, 896, 984, 1034
AluI AGCT 8 cut(s) 217, 236, 320, 601, 668, 896, 984, 1034
Alw21I GWGCWC 4 cut(s) 65, 219, 448, 758
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 2 cut(s) 743, 969
Ama87I CYCGRG 1 cut(s) 730
AoxI GGCC 3 cut(s) 469, 517, 698
ApaI GGGCCC 1 cut(s) 473
ApeKI GCWGC 4 cut(s) 716, 836, 839, 1044
Asp700I GAANNNNTTC 1 cut(s) 236
Asp718I GGTACC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 3 cut(s) 469, 470, 791
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 2 cut(s) 294, 937
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 1 cut(s) 791
BaeGI GKGCMC 1 cut(s) 473
BaeI ACNNNNGTAYC 4 cut(s) 414, 447, 624, 657
BanI GGYRCC 2 cut(s) 537, 1009
BanII GRGCYC 2 cut(s) 219, 473
BbsI GAAGAC 2 cut(s) 118, 590
Bbv12I GWGCWC 4 cut(s) 65, 219, 448, 758
BbvI GCAGC 4 cut(s) 703, 823, 826, 1056
BccI CCATC 2 cut(s) 368, 952
BciT130I CCWGG 4 cut(s) 556, 688, 702, 1105
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 2 cut(s) 399, 602
BfmI CTRYAG 2 cut(s) 463, 1063
BfrI CTTAAG 1 cut(s) 679
BisI GCNGC 4 cut(s) 717, 837, 840, 1045
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 4 cut(s) 718, 838, 841, 1046
Bme1390I CCNGG 5 cut(s) 556, 593, 688, 702, 1105
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 1 cut(s) 730
BmgT120I GGNCC 3 cut(s) 469, 470, 791
BmiI GGNNCC 5 cut(s) 470, 471, 539, 776, 1011
BmrFI CCNGG 5 cut(s) 556, 593, 688, 702, 1105
BmsI GCATC 2 cut(s) 500, 851
BpiI GAAGAC 2 cut(s) 118, 590
BpmI CTGGAG 1 cut(s) 709
Bpu1102I GCTNAGC 1 cut(s) 597
BpuEI CTTGAG 2 cut(s) 772, 1006
BpuMI CCSGG 1 cut(s) 593
BsaJI CCNNGG 4 cut(s) 45, 244, 701, 859
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 846
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 4 cut(s) 556, 688, 702, 1105
BseDI CCNNGG 4 cut(s) 45, 244, 701, 859
BseGI GGATG 2 cut(s) 240, 842
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 2 cut(s) 374, 588
BseNI ACTGG 1 cut(s) 846
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 4 cut(s) 703, 823, 826, 1056
BshFI GGCC 3 cut(s) 471, 519, 700
BshNI GGYRCC 2 cut(s) 537, 1009
BsiHKAI GWGCWC 4 cut(s) 65, 219, 448, 758
BsiHKCI CYCGRG 1 cut(s) 730
BsiSI CCGG 2 cut(s) 338, 593
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 685
BsnI GGCC 3 cut(s) 471, 519, 700
BsoBI CYCGRG 1 cut(s) 730
Bsp120I GGGCCC 1 cut(s) 469
Bsp1286I GDGCHC 5 cut(s) 65, 219, 448, 473, 758
Bsp143I GATC 4 cut(s) 735, 868, 961, 1059
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 3 cut(s) 471, 519, 700
BspCNI CTCAG 2 cut(s) 375, 589
BspLI GGNNCC 5 cut(s) 470, 471, 539, 776, 1011
BspPI GGATC 2 cut(s) 743, 969
BspT107I GGYRCC 2 cut(s) 537, 1009
BspTI CTTAAG 1 cut(s) 679
BsrDI GCAATG 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 1 cut(s) 846
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 4 cut(s) 45, 244, 701, 859
BssMI GATC 4 cut(s) 735, 868, 961, 1059
BssT1I CCWWGG 2 cut(s) 45, 244
Bst2UI CCWGG 4 cut(s) 556, 688, 702, 1105
Bst4CI ACNGT 5 cut(s) 55, 299, 532, 615, 760
Bst6I CTCTTC 2 cut(s) 162, 177
BstAFI CTTAAG 1 cut(s) 679
BstC8I GCNNGC 2 cut(s) 339, 1094
BstDEI CTNAG 3 cut(s) 383, 597, 695
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 240, 842
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 4 cut(s) 738, 871, 964, 1062
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 4 cut(s) 735, 868, 961, 1059
BstMWI GCNNNNNNNGC 2 cut(s) 716, 981
BstNI CCWGG 4 cut(s) 556, 688, 702, 1105
BstSCI CCNGG 5 cut(s) 554, 591, 686, 700, 1103
BstSFI CTRYAG 2 cut(s) 463, 1063
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 4 cut(s) 703, 823, 826, 1056
BstV2I GAAGAC 2 cut(s) 118, 590
BstX2I RGATCY 1 cut(s) 735
BstYI RGATCY 1 cut(s) 735
BsuRI GGCC 3 cut(s) 471, 519, 700
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 879
BtsCI GGATG 2 cut(s) 240, 842
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 4 cut(s) 60, 486, 611, 853
Cac8I GCNNGC 2 cut(s) 339, 1094
CfoI GCGC 1 cut(s) 1098
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 469, 470, 791
CsiI ACCWGGT 1 cut(s) 554
Csp6I GTAC 3 cut(s) 423, 538, 659
CviAII CATG 2 cut(s) 46, 771
CviQI GTAC 3 cut(s) 423, 538, 659
DdeI CTNAG 3 cut(s) 383, 597, 695
DpnI GATC 4 cut(s) 737, 870, 963, 1061
DpnII GATC 4 cut(s) 735, 868, 961, 1059
DraI TTTAAA 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 162, 177
EarI CTCTTC 2 cut(s) 162, 177
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 45, 244
Eco147I AGGCCT 1 cut(s) 700
Eco24I GRGCYC 2 cut(s) 219, 473
Eco32I GATATC 1 cut(s) 906
Eco47I GGWCC 1 cut(s) 791
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 3 cut(s) 300, 352, 551
Eco88I CYCGRG 1 cut(s) 730
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 469, 791
EcoRII CCWGG 4 cut(s) 554, 686, 700, 1103
EcoRV GATATC 1 cut(s) 906
EcoT14I CCWWGG 2 cut(s) 45, 244
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 219, 473
ErhI CCWWGG 2 cut(s) 45, 244
FaeI CATG 2 cut(s) 49, 774
FatI CATG 2 cut(s) 45, 770
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 717, 837, 840, 1045
FokI GGATG 2 cut(s) 227, 829
FriOI GRGCYC 2 cut(s) 219, 473
Fsp4HI GCNGC 4 cut(s) 717, 837, 840, 1045
FspBI CTAG 2 cut(s) 399, 602
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 4 cut(s) 717, 837, 840, 1045
GsuI CTGGAG 1 cut(s) 709
HaeIII GGCC 3 cut(s) 471, 519, 700
HapII CCGG 2 cut(s) 338, 593
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 2 cut(s) 49, 774
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 2 cut(s) 249, 992
HpaII CCGG 2 cut(s) 338, 593
HphI GGTGA 2 cut(s) 294, 937
Hpy166II GTNNAC 3 cut(s) 136, 302, 659
Hpy188I TCNGA 3 cut(s) 371, 496, 570
Hpy188III TCNNGA 1 cut(s) 965
Hpy8I GTNNAC 3 cut(s) 136, 302, 659
HpyAV CCTTC 2 cut(s) 3, 551
HpyCH4III ACNGT 5 cut(s) 55, 299, 532, 615, 760
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 5 cut(s) 146, 278, 491, 842, 1092
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 981
HpyF3I CTNAG 3 cut(s) 383, 597, 695
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 49, 774
HspAI GCGC 1 cut(s) 1096
KpnI GGTACC 1 cut(s) 541
KroI GCCGGC 1 cut(s) 337
KroNI GCCGGC 1 cut(s) 339
Kzo9I GATC 4 cut(s) 735, 868, 961, 1059
LmnI GCTCC 2 cut(s) 774, 893
Lsp1109I GCAGC 4 cut(s) 703, 823, 826, 1056
LweI GCATC 2 cut(s) 500, 851
MabI ACCWGGT 1 cut(s) 554
MaeI CTAG 2 cut(s) 399, 602
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 4 cut(s) 17, 49, 116, 993
MalI GATC 4 cut(s) 737, 870, 963, 1061
MboI GATC 4 cut(s) 735, 868, 961, 1059
MboII GAAGA 9 cut(s) 118, 149, 152, 164, 358, 595, 802, 959, 962
MfeI CAATTG 2 cut(s) 636, 825
MflI RGATCY 1 cut(s) 735
MhlI GDGCHC 5 cut(s) 65, 219, 448, 473, 758
MluCI AATT 2 cut(s) 636, 825
MlyI GAGTC 1 cut(s) 1001
MnlI CCTC 6 cut(s) 176, 180, 216, 341, 869, 1000
Mph1103I ATGCAT 1 cut(s) 148
MroNI GCCGGC 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 3 cut(s) 77, 680, 765
MslI CAYNNNNRTG 1 cut(s) 1002
MspCI CTTAAG 1 cut(s) 679
MspI CCGG 2 cut(s) 338, 593
MspR9I CCNGG 5 cut(s) 556, 593, 688, 702, 1105
MssI GTTTAAAC 1 cut(s) 78
MunI CAATTG 2 cut(s) 636, 825
MvaI CCWGG 4 cut(s) 556, 688, 702, 1105
MwoI GCNNNNNNNGC 2 cut(s) 716, 981
NaeI GCCGGC 1 cut(s) 339
NciI CCSGG 1 cut(s) 593
NcoI CCATGG 1 cut(s) 45
NdeII GATC 4 cut(s) 735, 868, 961, 1059
NgoMIV GCCGGC 1 cut(s) 337
NlaIII CATG 2 cut(s) 49, 774
NlaIV GGNNCC 5 cut(s) 470, 471, 539, 776, 1011
NmeAIII GCCGAG 2 cut(s) 840, 858
NmuCI GTSAC 1 cut(s) 993
NsiI ATGCAT 1 cut(s) 148
PceI AGGCCT 1 cut(s) 700
PdiI GCCGGC 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 4 cut(s) 718, 838, 841, 1046
PleI GAGTC 1 cut(s) 1000
PmeI GTTTAAAC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 1000
PpuMI RGGWCCY 1 cut(s) 791
Psp124BI GAGCTC 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 4 cut(s) 554, 686, 700, 1103
PspGI CCWGG 4 cut(s) 554, 686, 700, 1103
PspN4I GGNNCC 5 cut(s) 470, 471, 539, 776, 1011
PspOMI GGGCCC 1 cut(s) 469
PspPI GGNCC 3 cut(s) 469, 470, 791
PspPPI RGGWCCY 1 cut(s) 791
PsrI GAACNNNNNNTAC 2 cut(s) 530, 562
PsuI RGATCY 1 cut(s) 735
RsaI GTAC 3 cut(s) 424, 539, 660
RsaNI GTAC 3 cut(s) 423, 538, 659
RseI CAYNNNNRTG 1 cut(s) 1002
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 77, 680, 765
SatI GCNGC 4 cut(s) 717, 837, 840, 1045
Sau3AI GATC 4 cut(s) 735, 868, 961, 1059
Sau96I GGNCC 3 cut(s) 469, 470, 791
SchI GAGTC 1 cut(s) 1001
ScrFI CCNGG 5 cut(s) 556, 593, 688, 702, 1105
SduI GDGCHC 5 cut(s) 65, 219, 448, 473, 758
SexAI ACCWGGT 1 cut(s) 554
SfaNI GCATC 2 cut(s) 500, 851
SfcI CTRYAG 2 cut(s) 463, 1063
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 3 cut(s) 679, 751, 985
SmoI CTYRAG 3 cut(s) 679, 751, 985
Sse9I AATT 2 cut(s) 636, 825
SseBI AGGCCT 1 cut(s) 700
SspI AATATT 1 cut(s) 855
SspMI CTAG 2 cut(s) 399, 602
SstI GAGCTC 1 cut(s) 219
StuI AGGCCT 1 cut(s) 700
StyD4I CCNGG 5 cut(s) 554, 591, 686, 700, 1103
StyI CCWWGG 2 cut(s) 45, 244
TaaI ACNGT 5 cut(s) 55, 299, 532, 615, 760
TaiI ACGT 1 cut(s) 72
TasI AATT 2 cut(s) 636, 825
TatI WGTACW 1 cut(s) 658
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 3 cut(s) 77, 680, 765
Tru9I TTAA 3 cut(s) 77, 680, 765
TscAI CASTG 4 cut(s) 60, 493, 618, 853
TseFI GTSAC 1 cut(s) 993
TseI GCWGC 4 cut(s) 716, 836, 839, 1044
Tsp45I GTSAC 1 cut(s) 993
TspDTI ATGAA 6 cut(s) 118, 169, 229, 241, 340, 596
TspRI CASTG 4 cut(s) 60, 493, 618, 853
Vha464I CTTAAG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 2 cut(s) 399, 602
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.