Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

84567152 .. 84576875

Gene Structure 9724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53823

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCAGGGAGGTCTTGTTACAGAGATGTGTTGCCCTTTGCAGCCATGGTTACAGTGGAGAGCACCAACGTCGGCTTAAACATCTTGTTCAAGTTAGCAACCACAAAAGGGTTGAGTTACTATGTGTTCATTGTCTACTCTTATGCTTTTGCCACTGTTCTTCTCCTCCCTCTTCCTTTCATTTTTCCCAGAACAAGGCTTCCTCCATTGAACTTCTCTCTTCTCTTTAAAGCTTTCCTCCTTGGACTGATCGGGTTTGTGGCAAACATTTGTGCATATAAAGGTATAGATTACAGTTCACCAACTCTTGCTTCAGCTATGAGCAACCTCACTCCGGCTTTTACATTCATACTTGCCGTCATCTTCAGGATGGAAAGGCTGAGTTTGAGAAGCACCAACACTCGAGCCAAAGTCATGGGTACTATAGTGTCAGTATCAGGTGCTCTTGTAGTGGTTCTCTGTAAGGGCCCAACAATTCTATCCAATACGTCAGAGAGAAATTGGGTAAAAGGTGGCCTATTGCTCACTGTCGGGTACCTTCTGTTCTCTGCCTGGTCTATACTTCAGACTCATTTCATGAAGACATACCCGGTTGAGCTAGTTTGGGCATTGTTATACAACTTGTTTGGAACCATTATATCAGCACCAGTCTGTTTATTCATAGCCGAAACAAACTTAAGTGCCTGGAGACTACGGCCTGGCGTAGCATTGATTGCCATTATATACTCGGGGCTCATTATTTCAGCGTTCAGCACCATTGTTTCGACATGGAGCCTAAACTTGAAGGGTCCTGTGTATGTGTCAATCTTCAAGCCATTGTCGATTGGCATTGCTGCCGCATCCAGTGTCATATTCCTCGGCGATGATCTCTTTCTCGGCAGTGTTTTTGGAGCTGTAATGATATCCATAGGGTTTTATGGTGTAATATGGGGACAGGCAAAGGAAGAAGAAATGAGAGATCAAGACTATGAGTTTGATAGCTTGAAAGGGCTACATAACGGTAAGGCACCATTATTGGAAACCTACAAAGTTGAAAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

347

Amino Acids

38.03

Weight (kDa)

9.25

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	30 - 152	2.7e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	534
AccB1I	GGYRCC	2 cut(s)	534, 1006
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	837
AcuI	CTGAAG	3 cut(s)	297, 349, 548
AfaI	GTAC	2 cut(s)	421, 536
AfiI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
AflII	CTTAAG	1 cut(s)	676
AgsI	TTSAA	6 cut(s)	91, 211, 784, 811, 985, 1034
AjnI	CCWGG	3 cut(s)	551, 683, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	5 cut(s)	233, 317, 598, 893, 981
AluI	AGCT	5 cut(s)	233, 317, 598, 893, 981
Alw21I	GWGCWC	2 cut(s)	65, 445
Alw26I	GTCTC	1 cut(s)	682
Ama87I	CYCGRG	2 cut(s)	402, 727
AoxI	GGCC	3 cut(s)	466, 514, 695
ApaI	GGGCCC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	41, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
Asp718I	GGTACC	1 cut(s)	534
AspS9I	GGNCC	3 cut(s)	466, 467, 788
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	291
AvaI	CYCGRG	2 cut(s)	402, 727
AvaII	GGWCC	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
BanI	GGYRCC	2 cut(s)	534, 1006
BanII	GRGCYC	2 cut(s)	470, 735
BbsI	GAAGAC	1 cut(s)	587
Bbv12I	GWGCWC	2 cut(s)	65, 445
BbvI	GCAGC	2 cut(s)	53, 820
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	2 cut(s)	341, 710
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	3 cut(s)	553, 685, 699
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	676
BisI	GCNGC	3 cut(s)	42, 834, 837
BlsI	GCNGC	3 cut(s)	43, 835, 838
Bme1390I	CCNGG	4 cut(s)	553, 590, 685, 699
Bme18I	GGWCC	1 cut(s)	788
BmeT110I	CYCGRG	2 cut(s)	402, 727
BmgT120I	GGNCC	3 cut(s)	466, 467, 788
BmiI	GGNNCC	6 cut(s)	468, 536, 631, 773, 789, 1008
BmrFI	CCNGG	4 cut(s)	553, 590, 685, 699
BmsI	GCATC	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	706
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	3 cut(s)	45, 241, 856
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 195, 334
Bse1I	ACTGG	2 cut(s)	647, 843
Bse3DI	GCAATG	1 cut(s)	828
BseBI	CCWGG	3 cut(s)	553, 685, 699
BseDI	CCNNGG	3 cut(s)	45, 241, 856
BseGI	GGATG	2 cut(s)	375, 839
BseLI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
BseMI	GCAATG	1 cut(s)	828
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	647, 843
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	53, 820
BshFI	GGCC	3 cut(s)	468, 516, 697
BshNI	GGYRCC	2 cut(s)	534, 1006
BsiHKAI	GWGCWC	2 cut(s)	65, 445
BsiHKCI	CYCGRG	2 cut(s)	402, 727
BsiSI	CCGG	2 cut(s)	335, 590
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
BsmAI	GTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	3 cut(s)	468, 516, 697
BsoBI	CYCGRG	2 cut(s)	402, 727
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	4 cut(s)	65, 445, 470, 735
Bsp143I	GATC	3 cut(s)	249, 865, 958
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	837
BspANI	GGCC	3 cut(s)	468, 516, 697
BspCNI	CTCAG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	6 cut(s)	468, 536, 631, 773, 789, 1008
BspT107I	GGYRCC	2 cut(s)	534, 1006
BspTI	CTTAAG	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	828
BsrI	ACTGG	2 cut(s)	647, 843
BssECI	CCNNGG	3 cut(s)	45, 241, 856
BssMI	GATC	3 cut(s)	249, 865, 958
BssT1I	CCWWGG	2 cut(s)	45, 241
Bst2UI	CCWGG	3 cut(s)	553, 685, 699
Bst4CI	ACNGT	5 cut(s)	55, 157, 296, 529, 1001
Bst6I	CTCTTC	2 cut(s)	177, 225
BstAFI	CTTAAG	1 cut(s)	676
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	375, 839
BstKTI	GATC	3 cut(s)	252, 868, 961
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	3 cut(s)	249, 865, 958
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	3 cut(s)	553, 685, 699
BstSCI	CCNGG	4 cut(s)	551, 588, 683, 697
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	53, 820
BstV2I	GAAGAC	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	468, 516, 697
BtgI	CCRYGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	375, 839
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	5 cut(s)	60, 153, 525, 850, 886
CciI	TCATGA	1 cut(s)	576
Cfr13I	GGNCC	3 cut(s)	466, 467, 788
Csp6I	GTAC	2 cut(s)	420, 535
CviAII	CATG	4 cut(s)	46, 415, 577, 768
CviQI	GTAC	2 cut(s)	420, 535
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	3 cut(s)	251, 867, 960
DpnII	GATC	3 cut(s)	249, 865, 958
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	177, 225
EarI	CTCTTC	2 cut(s)	177, 225
Eco130I	CCWWGG	2 cut(s)	45, 241
Eco24I	GRGCYC	2 cut(s)	470, 735
Eco32I	GATATC	1 cut(s)	903
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	3 cut(s)	297, 349, 548
Eco88I	CYCGRG	2 cut(s)	402, 727
EcoO109I	RGGNCCY	2 cut(s)	466, 788
EcoRII	CCWGG	3 cut(s)	551, 683, 697
EcoRV	GATATC	1 cut(s)	903
EcoT14I	CCWWGG	2 cut(s)	45, 241
EcoT38I	GRGCYC	2 cut(s)	470, 735
ErhI	CCWWGG	2 cut(s)	45, 241
FaeI	CATG	4 cut(s)	49, 418, 580, 771
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	4 cut(s)	45, 414, 576, 767
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	42, 834, 837
FokI	GGATG	2 cut(s)	382, 826
FriOI	GRGCYC	2 cut(s)	470, 735
Fsp4HI	GCNGC	3 cut(s)	42, 834, 837
FspBI	CTAG	1 cut(s)	599
GluI	GCNGC	3 cut(s)	42, 834, 837
GsuI	CTGGAG	1 cut(s)	706
HaeIII	GGCC	3 cut(s)	468, 516, 697
HapII	CCGG	2 cut(s)	335, 590
Hin1II	CATG	4 cut(s)	49, 418, 580, 771
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	568
HpaII	CCGG	2 cut(s)	335, 590
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	136, 299
Hpy188I	TCNGA	2 cut(s)	493, 567
Hpy188III	TCNNGA	3 cut(s)	367, 577, 962
Hpy8I	GTNNAC	2 cut(s)	136, 299
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	548, 778
HpyCH4III	ACNGT	5 cut(s)	55, 157, 296, 529, 1001
HpyCH4IV	ACGT	2 cut(s)	69, 488
HpyCH4V	TGCA	2 cut(s)	41, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	2 cut(s)	69, 488
Hsp92II	CATG	4 cut(s)	49, 418, 580, 771
KpnI	GGTACC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	249, 865, 958
LmnI	GCTCC	2 cut(s)	771, 890
Lsp1109I	GCAGC	2 cut(s)	53, 820
LweI	GCATC	1 cut(s)	848
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	2 cut(s)	69, 488
MaeIII	GTNAC	3 cut(s)	17, 49, 116
MalI	GATC	3 cut(s)	251, 867, 960
MboI	GATC	3 cut(s)	249, 865, 958
MboII	GAAGA	8 cut(s)	152, 164, 212, 355, 592, 799, 956, 959
MhlI	GDGCHC	4 cut(s)	65, 445, 470, 735
MluCI	AATT	2 cut(s)	474, 499
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	7 cut(s)	3, 176, 180, 213, 248, 338, 866
MseI	TTAA	3 cut(s)	77, 228, 677
MspCI	CTTAAG	1 cut(s)	676
MspI	CCGG	2 cut(s)	335, 590
MspR9I	CCNGG	4 cut(s)	553, 590, 685, 699
MvaI	CCWGG	3 cut(s)	553, 685, 699
MwoI	GCNNNNNNNGC	1 cut(s)	713
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	249, 865, 958
NlaIII	CATG	4 cut(s)	49, 418, 580, 771
NlaIV	GGNNCC	6 cut(s)	468, 536, 631, 773, 789, 1008
NmeAIII	GCCGAG	2 cut(s)	837, 855
PaeR7I	CTCGAG	1 cut(s)	402
PagI	TCATGA	1 cut(s)	576
PkrI	GCNGC	3 cut(s)	43, 835, 838
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	788
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	551, 683, 697
PspGI	CCWGG	3 cut(s)	551, 683, 697
PspN4I	GGNNCC	6 cut(s)	468, 536, 631, 773, 789, 1008
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	3 cut(s)	466, 467, 788
PspPPI	RGGWCCY	1 cut(s)	788
PspXI	VCTCGAGB	1 cut(s)	402
PsrI	GAACNNNNNNTAC	2 cut(s)	527, 559
RsaI	GTAC	2 cut(s)	421, 536
RsaNI	GTAC	2 cut(s)	420, 535
SaqAI	TTAA	3 cut(s)	77, 228, 677
SatI	GCNGC	3 cut(s)	42, 834, 837
Sau3AI	GATC	3 cut(s)	249, 865, 958
Sau96I	GGNCC	3 cut(s)	466, 467, 788
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	4 cut(s)	553, 590, 685, 699
SduI	GDGCHC	4 cut(s)	65, 445, 470, 735
SfaNI	GCATC	1 cut(s)	848
SfcI	CTRYAG	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	788
SlaI	CTCGAG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	402, 676
SmoI	CTYRAG	2 cut(s)	402, 676
Sse9I	AATT	2 cut(s)	474, 499
SsiI	CCGC	1 cut(s)	837
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	4 cut(s)	551, 588, 683, 697
StyI	CCWWGG	2 cut(s)	45, 241
TaaI	ACNGT	5 cut(s)	55, 157, 296, 529, 1001
TaiI	ACGT	2 cut(s)	72, 491
TaqI	TCGA	3 cut(s)	403, 764, 821
TasI	AATT	2 cut(s)	474, 499
TauI	GCSGC	1 cut(s)	839
Tru1I	TTAA	3 cut(s)	77, 228, 677
Tru9I	TTAA	3 cut(s)	77, 228, 677
TscAI	CASTG	5 cut(s)	60, 160, 532, 850, 886
TseI	GCWGC	2 cut(s)	41, 833
TspDTI	ATGAA	6 cut(s)	118, 169, 337, 565, 593, 649
TspRI	CASTG	5 cut(s)	60, 160, 532, 850, 886
Vha464I	CTTAAG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.