Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

67835992 .. 67836168

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0551200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAAGGGCATTTGTGACGTTCAACAGCTCACAAGACATTTTGAGTGTATCTCTTTTAACAATATTTTTAGAGAAGTAAATTTTGCAGACGATTCTTTAACAAATATAGCAGTGACCAATTTTGGTCCAATGTCACTCCTGTCCAGACTTTTAACGCCATTTTATTCGAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

58

Amino Acids

6.66

Weight (kDa)

6.52

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu14I	TTCGAA	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	125
CviJI	RGCY	1 cut(s)	28
CviKI_1	RGCY	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	125
FaiI	YATR	1 cut(s)	107
FspEI	CC	6 cut(s)	108, 130, 141, 152, 157, 171
HinfI	GANTC	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	18
LpnPI	CCDG	2 cut(s)	152, 157
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	14, 112, 132
MluCI	AATT	3 cut(s)	79, 118, 170
MseI	TTAA	3 cut(s)	57, 98, 152
NmuCI	GTSAC	3 cut(s)	14, 112, 132
NspV	TTCGAA	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	57, 98, 152
Sau96I	GGNCC	1 cut(s)	125
SetI	ASST	2 cut(s)	21, 30
SfuI	TTCGAA	1 cut(s)	167
SgeI	CNNG	3 cut(s)	45, 151, 156
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	3 cut(s)	79, 118, 170
SspI	AATATT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	79, 118, 170
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	57, 98, 152
Tru9I	TTAA	3 cut(s)	57, 98, 152
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	3 cut(s)	14, 112, 132
Tsp45I	GTSAC	3 cut(s)	14, 112, 132
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.