Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

79349587 .. 79351409

Gene Structure 1823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCAATGGCATGGAGTTACTATCATAAGGATGTTCTACCGTTCATTGCCATGGTTACAATGGAGTGCACTAATGTTGGAGGGTTGAGCTACGATGTCTTCATTGTCTACTCTTATGCAATTGGCACCATTCTTCTGTTTCCTCTGATGTTCATCTTTCAATACAGTTCACCTACTCTTGCTTCAGCTATGGGCAACCTCTCTCCTGCATTTATCTTCATACTTGCTGTAGTCTTCAGGATGGAAAGGGTGACTTTGAGAAGCAATAGGTCTCAAGCCAAAGTCATGGTGGTACTCTATAAGTGTCCAACAATTTTATCCATTACAACAGAAAAGGATTGGATAAAAGGTGGCCATTTACTTACTGTTGGGTACCTTCTATTCTCAGCCTGGTCTAGTTCTGGCTTCTTATACAACTTGTGTGGCACAATTATATTGGCACCAGTATGTTTCTTAGCTGAAAGAAACTTGAGTGCCTGGAGACCACAACCTGTTATTCCGTTGCCTGCCATTATCTACTCGGGAGTATTTGGTTCATCCGTCAGCATTCTAGTTCACATATGGGGCCTGCACTTGAAGGGTCCTGTTTATATTTCAAGCTTCAAGCCATTGTCAATTGCAATTGCTGCTGCTTTCGGTGTCATATTCCTTGGTGATGGTCTCTCTCTTGGCAGTGTTGTTGGAGCTGCAACGCTATCAATAGGTTTTTATGCAGTAATTTGGGGAAAAGGGAAAAGAAGAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

249

Amino Acids

27.27

Weight (kDa)

9.58

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	136 - 239	1.4e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	3 cut(s)	125, 372, 439
AccI	GTMKAC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	352
AcuI	CTGAAG	2 cut(s)	168, 220
AfaI	GTAC	2 cut(s)	294, 374
AgsI	TTSAA	4 cut(s)	161, 577, 597, 604
AjnI	CCWGG	2 cut(s)	389, 476
AluBI	AGCT	5 cut(s)	90, 188, 458, 600, 686
AluI	AGCT	5 cut(s)	90, 188, 458, 600, 686
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	3 cut(s)	276, 475, 665
Alw44I	GTGCAC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	520
AoxI	GGCC	2 cut(s)	352, 565
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	626, 629, 686
Asp718I	GGTACC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	565, 581
AsuHPI	GGTGA	3 cut(s)	162, 262, 665
AvaI	CYCGRG	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	3 cut(s)	125, 372, 439
BbsI	GAAGAC	2 cut(s)	91, 226
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	613, 616, 673
BccI	CCATC	2 cut(s)	235, 650
BciT130I	CCWGG	2 cut(s)	391, 478
BcoDI	GTCTC	3 cut(s)	276, 475, 665
BfaI	CTAG	2 cut(s)	396, 551
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	627, 630, 687
BlsI	GCNGC	3 cut(s)	628, 631, 688
Bme1390I	CCNGG	2 cut(s)	391, 478
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	565, 581
BmiI	GGNNCC	5 cut(s)	127, 374, 441, 566, 582
BmrFI	CCNGG	2 cut(s)	391, 478
BpiI	GAAGAC	2 cut(s)	91, 226
BpmI	CTGGAG	1 cut(s)	499
BpuEI	CTTGAG	2 cut(s)	258, 490
BsaBI	GATNNNNATC	1 cut(s)	152
BsaI	GGTCTC	3 cut(s)	276, 475, 665
BsaJI	CCNNGG	2 cut(s)	51, 649
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	2 cut(s)	12, 45
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	391, 478
BseDI	CCNNGG	2 cut(s)	51, 649
BseGI	GGATG	3 cut(s)	37, 246, 536
BseJI	GATNNNNATC	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	12, 45
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	613, 616, 673
BsgI	GTGCAG	1 cut(s)	554
BshFI	GGCC	2 cut(s)	354, 567
BshNI	GGYRCC	3 cut(s)	125, 372, 439
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	520
BsmAI	GTCTC	3 cut(s)	276, 475, 665
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	354, 567
Bso31I	GGTCTC	3 cut(s)	276, 475, 665
BsoBI	CYCGRG	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	2 cut(s)	354, 567
BspCNI	CTCAG	1 cut(s)	398
BspLI	GGNNCC	5 cut(s)	127, 374, 441, 566, 582
BspT107I	GGYRCC	3 cut(s)	125, 372, 439
BspTNI	GGTCTC	3 cut(s)	276, 475, 665
BsrDI	GCAATG	2 cut(s)	12, 45
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	51, 649
BssT1I	CCWWGG	2 cut(s)	51, 649
Bst2UI	CCWGG	2 cut(s)	391, 478
Bst4CI	ACNGT	3 cut(s)	42, 167, 367
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	507, 569
BstDEI	CTNAG	2 cut(s)	385, 454
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	37, 246, 536
BstMAI	GTCTC	3 cut(s)	276, 475, 665
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNI	CCWGG	2 cut(s)	391, 478
BstSCI	CCNGG	2 cut(s)	389, 476
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	613, 616, 673
BstV2I	GAAGAC	2 cut(s)	91, 226
BstXI	CCANNNNNNTGG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	354, 567
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	37, 246, 536
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	507, 569
Cfr13I	GGNCC	2 cut(s)	565, 581
Csp6I	GTAC	2 cut(s)	293, 373
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	3 cut(s)	12, 52, 286
CviQI	GTAC	2 cut(s)	293, 373
DdeI	CTNAG	2 cut(s)	385, 454
EaeI	YGGCCR	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	51, 649
Eco31I	GGTCTC	3 cut(s)	276, 475, 665
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	168, 220
Eco88I	CYCGRG	1 cut(s)	520
EcoO109I	RGGNCCY	2 cut(s)	565, 581
EcoRII	CCWGG	2 cut(s)	389, 476
EcoT14I	CCWWGG	2 cut(s)	51, 649
ErhI	CCWWGG	2 cut(s)	51, 649
FaeI	CATG	3 cut(s)	15, 55, 289
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	3 cut(s)	11, 51, 285
FauNDI	CATATG	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	627, 630, 687
FokI	GGATG	3 cut(s)	44, 253, 523
Fsp4HI	GCNGC	3 cut(s)	627, 630, 687
FspBI	CTAG	2 cut(s)	396, 551
GluI	GCNGC	3 cut(s)	627, 630, 687
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	354, 567
Hin1II	CATG	3 cut(s)	15, 55, 289
HindIII	AAGCTT	1 cut(s)	598
HphI	GGTGA	3 cut(s)	162, 262, 665
Hpy166II	GTNNAC	4 cut(s)	69, 109, 170, 556
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	238, 522
Hpy8I	GTNNAC	4 cut(s)	69, 109, 170, 556
HpyAV	CCTTC	2 cut(s)	386, 571
HpyCH4III	ACNGT	3 cut(s)	42, 167, 367
HpyCH4V	TGCA	7 cut(s)	69, 119, 209, 571, 620, 689, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	2 cut(s)	385, 454
Hsp92II	CATG	3 cut(s)	15, 55, 289
KpnI	GGTACC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	3 cut(s)	613, 616, 673
MaeI	CTAG	2 cut(s)	396, 551
MaeIII	GTNAC	3 cut(s)	17, 55, 250
MboII	GAAGA	5 cut(s)	91, 125, 208, 226, 750
MfeI	CAATTG	3 cut(s)	120, 615, 621
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	7 cut(s)	120, 312, 429, 615, 621, 717, 745
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	3 cut(s)	58, 332, 661
MnlI	CCTC	3 cut(s)	74, 153, 209
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MslI	CAYNNNNRTG	3 cut(s)	30, 50, 445
Msp20I	TGGCCA	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	391, 478
MunI	CAATTG	3 cut(s)	120, 615, 621
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	391, 478
MwoI	GCNNNNNNNGC	1 cut(s)	626
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	560
NlaIII	CATG	3 cut(s)	15, 55, 289
NlaIV	GGNNCC	5 cut(s)	127, 374, 441, 566, 582
NmuCI	GTSAC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	546
PkrI	GCNGC	3 cut(s)	628, 631, 688
PpuMI	RGGWCCY	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	389, 476
PspGI	CCWGG	2 cut(s)	389, 476
PspN4I	GGNNCC	5 cut(s)	127, 374, 441, 566, 582
PspPI	GGNCC	2 cut(s)	565, 581
PspPPI	RGGWCCY	1 cut(s)	581
RsaI	GTAC	2 cut(s)	294, 374
RsaNI	GTAC	2 cut(s)	293, 373
RseI	CAYNNNNRTG	3 cut(s)	30, 50, 445
SatI	GCNGC	3 cut(s)	627, 630, 687
Sau96I	GGNCC	2 cut(s)	565, 581
ScrFI	CCNGG	2 cut(s)	391, 478
SduI	GDGCHC	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	3 cut(s)	30, 50, 445
SmlI	CTYRAG	2 cut(s)	273, 469
SmoI	CTYRAG	2 cut(s)	273, 469
Sse9I	AATT	7 cut(s)	120, 312, 429, 615, 621, 717, 745
SspMI	CTAG	2 cut(s)	396, 551
StyD4I	CCNGG	2 cut(s)	389, 476
StyI	CCWWGG	2 cut(s)	51, 649
TaaI	ACNGT	3 cut(s)	42, 167, 367
TasI	AATT	7 cut(s)	120, 312, 429, 615, 621, 717, 745
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	626, 629, 686
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	5 cut(s)	34, 91, 142, 208, 525
TspGWI	ACGGA	2 cut(s)	489, 529
TspRI	CASTG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 286
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	396, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.