Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

87344960 .. 87365804

Gene Structure 20845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG646600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGACAACAAGAGGGTAATTCTTAACCAATGTTGGACAATTCACCCTCTTGTTGCACAAATATCCGTTAAAGGGCTTCCACCATTCAAGCTCTCTCTCATATTTAAACTCTTCCTCCTTGGGATAATCGGTGTTGTTGGAGCTGTAATGCTATCCATAGGGTTGTTTGCAGTACTATGGGGAAAGGCAAAAGAAGAAGAAATGAGCGAAGACTGTGGCTTTGATAGCTTGAGAGGGTTACCTATTTGTAAGAAACCTCTGTTGGAGAGCTACAAAGTTGAAAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

96

Amino Acids

10.69

Weight (kDa)

8.5

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	88, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	4 cut(s)	91, 143, 228, 270
AluI	AGCT	4 cut(s)	91, 143, 228, 270
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AsuHPI	GGTGA	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	216
BmcAI	AGTACT	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	116
BstEII	GGTNACC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	289
BstPI	GGTNACC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	6 cut(s)	76, 91, 143, 219, 228, 270
CviKI_1	RGCY	6 cut(s)	76, 91, 143, 219, 228, 270
CviQI	GTAC	1 cut(s)	173
DraI	TTTAAA	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	118
Eco91I	GGTNACC	1 cut(s)	237
EcoO65I	GGTNACC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	1 cut(s)	289
FaiI	YATR	4 cut(s)	101, 158, 178, 287
FatI	CATG	1 cut(s)	285
Hin1II	CATG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	56, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	103, 206, 209, 221
MluCI	AATT	2 cut(s)	18, 39
MmeI	TCCRAC	3 cut(s)	14, 118, 243
MnlI	CCTC	5 cut(s)	6, 57, 125, 227, 267
MseI	TTAA	3 cut(s)	24, 69, 105
MwoI	GCNNNNNNNGC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	289
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PscI	ACATGT	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	237
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	24, 69, 105
ScaI	AGTACT	1 cut(s)	174
SetI	ASST	6 cut(s)	93, 145, 230, 244, 259, 272
SgeI	CNNG	5 cut(s)	22, 62, 100, 131, 241
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	18, 39
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	215
TasI	AATT	2 cut(s)	18, 39
TatI	WGTACW	1 cut(s)	172
Tru1I	TTAA	3 cut(s)	24, 69, 105
Tru9I	TTAA	3 cut(s)	24, 69, 105
TspGWI	ACGGA	1 cut(s)	55
XceI	RCATGY	1 cut(s)	289
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.