Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

85612306 .. 85612654

Gene Structure 349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG634500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCAATGGCATGGAGGTACTATCATAAGGATGTTCTACCGTTCATCGCCATGGTTACAATGGAGTGCACTAATGTTGGGTTAAACGTCTTATTCAAAGCAGCCACCTCAAGAGGGTTGAGCTACTCTGTCTTCATTGTCTACTCTTATGCAATTGGCACCATTCTTCTGTTTCCTCTGACTTTCATCTTTCGCAGAACAGAACTTCCTCCCTTCAAGCTCACTCTCCTCTTTAAACTGTTATCCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

84

Amino Acids

9.69

Weight (kDa)

9.52

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	97, 217
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	2 cut(s)	123, 220
AluI	AGCT	2 cut(s)	123, 220
Alw21I	GWGCWC	1 cut(s)	71
Alw44I	GTGCAC	1 cut(s)	67
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	51, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	51, 246
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	51, 246
BssT1I	CCWWGG	2 cut(s)	51, 246
Bst4CI	ACNGT	2 cut(s)	42, 240
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	12, 52
CviJI	RGCY	3 cut(s)	104, 123, 220
CviKI_1	RGCY	3 cut(s)	104, 123, 220
CviQI	GTAC	1 cut(s)	19
DraI	TTTAAA	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	51, 246
EcoT14I	CCWWGG	2 cut(s)	51, 246
ErhI	CCWWGG	2 cut(s)	51, 246
FaeI	CATG	2 cut(s)	15, 55
FaiI	YATR	4 cut(s)	13, 27, 53, 150
FatI	CATG	2 cut(s)	11, 51
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	15, 55
Hpy166II	GTNNAC	2 cut(s)	69, 142
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	111
Hpy8I	GTNNAC	2 cut(s)	69, 142
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	42, 240
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	69, 152
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	15, 55
Lsp1109I	GCAGC	1 cut(s)	113
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	124, 158
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	6 cut(s)	9, 107, 118, 186, 219, 239
MseI	TTAA	2 cut(s)	83, 234
MslI	CAYNNNNRTG	2 cut(s)	30, 50
MunI	CAATTG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	51
NlaIII	CATG	2 cut(s)	15, 55
NlaIV	GGNNCC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	30, 50
SaqAI	TTAA	2 cut(s)	83, 234
SatI	GCNGC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	5 cut(s)	20, 90, 110, 125, 222
SgeI	CNNG	4 cut(s)	24, 64, 123, 229
SmiMI	CAYNNNNRTG	2 cut(s)	30, 50
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	153
StyI	CCWWGG	2 cut(s)	51, 246
TaaI	ACNGT	2 cut(s)	42, 240
TaiI	ACGT	1 cut(s)	90
TasI	AATT	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	83, 234
Tru9I	TTAA	2 cut(s)	83, 234
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	34, 124, 175
VneI	GTGCAC	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.